Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00263 ATGACTTGGAGGAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCCACAGTTGGTGGGTTATTTTTTTCCCACTTTGGGTGTTTCATGTCGTTGTTGCTCGGGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGCCATTGGGCACCGTGCCATGCCGTTGTCTCCACGCCTTTGCTTGTAACATTTGAATTACTTCTTTGTATATACCTCGAGAGCCTGTCTGTTTATGGTTTTCCTGCTGTGAATTTGAAGATTGTCTTTCTACCGTTGCTGGCTTTTGAAATCATCATTTTAATCGATAATTTCAGAATGTGTAGATCACTAATGCCCGGTGACGACGAAAGCATGAGCGATGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTCGTCGCTGCTACAGTGTTTACTCTACTGAAGCTATGTGGGAGTGTTGGTGCTCTTGGCTGGTGGGACTTATTTATTAACTTTGGCATTGCGGAGTGCTTTGCGTTTCTCGTCTGTACAAAGTGGTCTAATCCTGTGATTCATAGAAATATTCAAACAAGAGAAACTTGTTCATCATCAGCCGTAGTTAGATATCTAGATTGGAACAACGGTCTGATGGTTTATCCAGAGCAGGATGAGCATCAAGACAGAATGTGTGGCCTTCAAGACATTGGCGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAGTCCTACTTTGCATGTATTTAGAGGGAACACCTGCGAGCGCAAAACATATACCACTTCCTGTCCTTTTCTCGCCCCTTTTTATACTGCAAGGTGCTGCTGTTATTTATGCGGCATCTAGATTGTTAGAGAAAGTTATACTTCTCTTAAGAGGTGGAACAGGCACTGCCCCGTATCTCAGTTTTTCTGCTAGGGCTCATGCCTTCTTGGAGTTCTTTCATCATGGTTCGAGGCTATTGGGATGGTGGTCAATTGATGAAGGCAGTAGAGAGGAGCAGGCACGACTGTACCACGAGGGTGCCTCAGGGTACAATACGTTTAGTGGATATCCTCCCGAGATTGTGAAGAAGATGCCCAAGAAAGATCTTGCCGAGGAGGTCTGGCGCCTTCAAGCTGCATTAGGGGAGCAAACAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGGGAAATTAGCGTGGTTCTTCTTCCATGTAGGCATCGTGTACTATGCAGTACCTGCTGTGAGAAGTGTAAAAAGTGCCCAATTTGTCGTGTCTGTATCGAAGAACGATTAGCGGTATACGATGTTTAG 1404 44.8 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVSTPLLVTFELLLCIYLESLSVYGFPAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLCGSVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRNIQTRETCSSSAVVRYLDWNNGLMVYPEQDEHQDRMCGLQDIGGHIMKIPIIVFQVLLCMYLEGTPASAKHIPLPVLFSPLFILQGAAVIYAASRLLEKVILLLRGGTGTAPYLSFSARAHAFLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSTCCEKCKKCPICRVCIEERLAVYDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1296730 1302483 + CmoCh11G002630.1 Cmo11g00263 390882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00263 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Cmo11g00263 467 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 467 - -
Cmo11g00263 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 466 IPR013083 -
Cmo11g00263 467 SUPERFAMILY RING/U-box 411 461 - -
Cmo11g00263 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Cmo11g00263 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Cmo11g00263 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02107 Cmo-Chr4:13502777 Cmo11g00263 Cmo-Chr11:1296730 4.62E-113 dispersed
Cmo11g00263 Cmo-Chr11:1296730 Cmo19g00700 Cmo-Chr19:7385691 1.29E-08 dispersed
Cmo04g02108 Cmo-Chr4:13506098 Cmo11g00263 Cmo-Chr11:1296730 2.97E-90 transposed
Cmo10g00269 Cmo-Chr10:1183016 Cmo11g00263 Cmo-Chr11:1296730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00263 - - csv:101215825 901.353