Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00273 ATGGTTGTTCTTGCTGAGTCCCGTTGTCGTCATCATCATCGTCGTTCATCAAAATCTCAAAGAGATGAGATATGTGTATTCTTCTTCGTTATTCATCCATCCATCGAGCCATGCGTATTAGCTGTAATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAAAGCTGCTCCATCAGGCCTTGTCTTCAATGGATCAAAACCCCCCAATCCCAAGCCAACGCCACCTTCTTCCTTGCCAAATTCTACGGCCGAGCTGGCCTCGTTAATCTCATCAATGCCGGCCCCGATCATCTCCGCCCTGGTATTTCATCATATTCTACTCTGTTTCAATTACTCTGTTTTCATTGCTCTGTTTCAGTTACCTAAGGCTGTTTTTTGTTTTTTGGGTGTTTCAGCGATTTTTAAATCTTTGCTATTCGAGGCGTGTGGGCGGATTGTGAACCCGATTTATGGGTCGGCCGGACTGTTGTGGTCCGGGAGCTGGCAGCTGTGTCAGGACGCCGTCGAAGCCGTTCTCAAAGGTGCACCGATTCTGTCTGTTTCTTCTGAGACTGCGGTGTCGCACATGGGCCCACCGTTGAAGGGCTGCGACATCCGCCACGTTTCGAAACAGCAAGGCGCCGCCCCCGATTCCGCGCTCCGGAAGATCAAAACACGACGGCGGTTCAAGCGATCGGCGCCCAACAAGCCGATGCCGAAGGAGGAGCCGGTGGTGGTAAATGAGTTCGTATTCGACGATCCGACTCGAGTTGTATCGGAGCCCCGGTGTTTGAAGTTCGAGCTGGATAGTTGGGTGGGCCATAAATCGCAGGAGAAGGACTGCAGCAGCAGCAGCGACGAGGCCGAGTGTTTGTCGGTGGAGGGTTCTGCAGTTGGGCAGGGTGGTGACGTGGAGTTAGAACTTAGCTTGGGGTTATAG 918 52.4 MVVLAESRCRHHHRRSSKSQRDEICVFFFVIHPSIEPCVLAVMDAEFFAKAAVKAAPSGLVFNGSKPPNPKPTPPSSLPNSTAELASLISSMPAPIISALVFHHILLCFNYSVFIALFQLPKAVFCFLGVSAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGPPLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVVSEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1337398 1339846 - CmoCh11G002730.1 Cmo11g00273 390892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00273 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 132 276 - -
Cmo11g00273 305 Pfam Lateral organ boundaries (LOB) domain 132 170 IPR004883 -
Cmo11g00273 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 132 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00273 - - - csv:101219232 267.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00250 Cmo11g00273 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00273 Cmo-Chr11:1337398 Cmo14g00825 Cmo-Chr14:4272280 2.04E-39 dispersed
Cmo10g00250 Cmo-Chr10:1112817 Cmo11g00273 Cmo-Chr11:1337398 1.21E-77 wgd
Cmo11g00273 Cmo-Chr11:1337398 Cmo18g01029 Cmo-Chr18:11077585 2.60E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g327 . . . . . . . . . . Cma10g00235 Cma11g00267 Car10g00222 Car11g00244 . . Cpe04g01407 . . . . . . . Cla06g01470 Cam06g1623 Cec06g1686 Cco06g1678 Clacu06g1588 Cmu06g1539 Cre06g2350 . . . . . . . . . . . . . . . . . Cmo10g00250 Cmo11g00273 . . . . . Cpe18g00757 . . . . . . . . . . . . . . Lsi06g01333 Csa01g00381 Chy02g02365 Cme02g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025938 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10536 PF03195 LOB 1.60E-05 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00273 Cmo_Chr11 FPKM 0.896494 0.910751 9.801442 10.578917 2.051162 1.353569 1.569831 0.192325 0.362516 0.234713