Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00277 ATGGCTTTCGCAACTGCCAAACTATCGGAATTGCCATTGAAGAACTCACTTCCACTGTCCTCTCACTCGCGTACGCTTCTCTCAAACCCGAATTTTTCTTTTCAGATTCCAAGAACATTTTCTTCTCTCAGAACTCCCACTGAGCATAGCGGCAAGAGAAACCCTAAAACCTCGCAGAAGTCTGGACCCTCTTCTTCTTCTTCTTCTTCTTGGGGTTCCAGGTGGCCTTCTGGGAGCTCTCGGAATGATCGGAAAGTTGAGAAGAAGGTAGCCGAAACGACACGAGATGATCGAACCGATCGAGCGAAGAATCAGACGGAGTACTTGGATAAGAACAAAGGGCAGAGTTCAATTGAGCGAATTGTTCTTCGCTTACGAAATTTAGGGATAGGATCAGATGATGAGGAGGAGAAGGAGGAGGATGAAGAGGATAATGAATTGGATTTTCTCCAGGCAATGCCGGTGACTGGGAAGGAAAAACTGGGGGATTTACTGCAACGTGAATGGATTCGACCGGATGGCACATTGGATTCGAATAAGGATGGGGAGGATGATATGGTTTTACCATGGGAGAGAGAGGACAGGGAGGAAGAGGTGGAGGGTGGAAGCGGGTTGAAAAGGAGAAAGATGAAGGCTCCGACGTTAGCTGAATTGACAATTGAAGATGAGGAGCTGAGGCGGCTGAGGAGAATGGGGATGTTTATTAAAGAGCGGATTAATATACCGAAAGCAGGGATTACACAGGCAGTGCTGGAGAAGATTCATTTGAAATGGAGGAAGGAGGAGTTGGTGAGGCTCAAGTTCCATGAGGAGCTTGCACATGATATGAAGACAGCCCACGAGATTGTAGAGCGACGAACTGGAGGATTGGTTCTTTGGAGGTCTGGAAGTGTTATGGTAGTTTACCGTGGTAGTAACTATGAAGGGCCATCTAAAACTAAGCCCCCTGCAAGGGAGGGGGATGTGGTATTTATCCCGGATGTTTCTTCTGCTGCCACTTCGACAACGAGTGGCAATGTTGCCGTTTCAGCTCCGGAGAAGGCTATGTTGCCTATTGGGGCTCCAAAGTCTAATGAGGCCATGTCAGAGGAAGAGGCTGAATACAACCAACTAATTGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACGGGAGTTCTTCCCATCGATGCCGATCAGCTTCCTCCTACTGTTCCTGGTTACAAAACACCTTTCAGGCTTCTCCCAACAGGAATGCGGTCTCGACTGACCAATGCAGAGATGACTCAAATGAGGAAACTTGCAAAATCCTTACCTTGTCATTTTGCCCTTGGGAGAAACAGGAACCATCAGGGCTTGGCAGTTGCTATACTTAAACTTTGGGAAAAGAGCCTAGTAGCTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAACAATAAACTCATGGCTGAGGAGATAAAGAACTTAACAGGAGGTGTGTTACTGTTGAGAAATAAATATTTTATCGTCATATACCGTGGGAAGGATTTTCTCCCAACAAGTGTAGCCACAGCTTTGGCAGAAAGGCAGGAATTAACGAAACACATTCAAGATGTGGAAGAGAAAACTCGAAGTAAAGTGGTTGAAGCAACTTCATCGAGCAATGATGGACAGGCACCTGCAGGTACTTTGGCTGAATTCTATGAGGCTCAGTCCCGATGGGGAAGGGAAATATCTGCAGAAGATCGTGAAAAAATGATTGAAGAAAGCTCGAGAGCAAAAACTGAAAGACTTATCAGACGAATTGAACATAAGCTTGGTGTTGCCCAAGCAAAGAAACTTAGAGCAGAAAAGTTGTTATCTAAAATTGAAGCGTCCATGATCCTCTCTAGCCCTGATGATGACCAAGAAACAATAACAGAAGAGGAACGGGTCATGTTTCGGAAGGTTGGGTTACGAATGACCGCTTATTTACCTATAGGCATTCGTGGTGTCTTTGATGGTGTTGTTGAAAACATGCATTTACATTGGAAGCATAGGGAACTCGTGAAGTTGATTAGCAAGCAAAAGACACTTGCTTTTGTGGAAGAAACGGCAAGGTTGTTAGCGTATGAGAGTGGCGGAATACTAGTTTCGATAGATAGAGTTCCAAAAGGATATGCCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATTGCCTTGAGGCCAAGAAACTTGCTTACAAAGGCAAAAGCATTAAAGCGTTCAGTGGCCATGCAGCGCCATGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAGAACATAGACCAAATGAAGAAAGACATTGGTGTCACCGAAGATTCAGAGGACGAGAGGAACTGGTCGTCTCAGGATGGACCTGTCTCAGAGTCTTTCCAAGATGAGGAAGCATCTTTGTCCGCATTTTCGGATGATGAGAATGACGAAGATGAAAATGACGAAGATAGCGAGTACGAAGAGGATGAAGATTTTGATTTTTCCGACTCAGAAGACACTGATGATCCAGTGAACTAA 2505 45.07 MAFATAKLSELPLKNSLPLSSHSRTLLSNPNFSFQIPRTFSSLRTPTEHSGKRNPKTSQKSGPSSSSSSSWGSRWPSGSSRNDRKVEKKVAETTRDDRTDRAKNQTEYLDKNKGQSSIERIVLRLRNLGIGSDDEEEKEEDEEDNELDFLQAMPVTGKEKLGDLLQREWIRPDGTLDSNKDGEDDMVLPWEREDREEEVEGGSGLKRRKMKAPTLAELTIEDEELRRLRRMGMFIKERINIPKAGITQAVLEKIHLKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKTKPPAREGDVVFIPDVSSAATSTTSGNVAVSAPEKAMLPIGAPKSNEAMSEEEAEYNQLIDGLGPRFVEWWGTGVLPIDADQLPPTVPGYKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEEIKNLTGGVLLLRNKYFIVIYRGKDFLPTSVATALAERQELTKHIQDVEEKTRSKVVEATSSSNDGQAPAGTLAEFYEAQSRWGREISAEDREKMIEESSRAKTERLIRRIEHKLGVAQAKKLRAEKLLSKIEASMILSSPDDDQETITEEERVMFRKVGLRMTAYLPIGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLAYESGGILVSIDRVPKGYALIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIDQMKKDIGVTEDSEDERNWSSQDGPVSESFQDEEASLSAFSDDENDEDENDEDSEYEEDEDFDFSDSEDTDDPVN 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1351036 1355729 - CmoCh11G002770.1 Cmo11g00277 390896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00277 834 ProSiteProfiles CRM domain profile. 625 725 IPR001890 GO:0003723
Cmo11g00277 834 MobiDBLite consensus disorder prediction 80 108 - -
Cmo11g00277 834 SMART CRS1_YhbY_2 627 714 IPR001890 GO:0003723
Cmo11g00277 834 SMART CRS1_YhbY_2 220 303 IPR001890 GO:0003723
Cmo11g00277 834 SMART CRS1_YhbY_2 417 501 IPR001890 GO:0003723
Cmo11g00277 834 MobiDBLite consensus disorder prediction 796 834 - -
Cmo11g00277 834 MobiDBLite consensus disorder prediction 781 795 - -
Cmo11g00277 834 MobiDBLite consensus disorder prediction 768 834 - -
Cmo11g00277 834 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 829 IPR045278 GO:0000375|GO:0003729
Cmo11g00277 834 ProSiteProfiles CRM domain profile. 218 314 IPR001890 GO:0003723
Cmo11g00277 834 SUPERFAMILY YhbY-like 626 724 IPR035920 -
Cmo11g00277 834 MobiDBLite consensus disorder prediction 1 114 - -
Cmo11g00277 834 SUPERFAMILY YhbY-like 219 312 IPR035920 -
Cmo11g00277 834 Gene3D - 626 728 IPR035920 -
Cmo11g00277 834 Gene3D - 416 511 IPR035920 -
Cmo11g00277 834 Gene3D - 218 315 IPR035920 -
Cmo11g00277 834 Pfam CRS1 / YhbY (CRM) domain 628 713 IPR001890 GO:0003723
Cmo11g00277 834 Pfam CRS1 / YhbY (CRM) domain 417 501 IPR001890 GO:0003723
Cmo11g00277 834 Pfam CRS1 / YhbY (CRM) domain 221 303 IPR001890 GO:0003723
Cmo11g00277 834 SUPERFAMILY YhbY-like 417 508 IPR035920 -
Cmo11g00277 834 Coils Coil 510 530 - -
Cmo11g00277 834 MobiDBLite consensus disorder prediction 14 48 - -
Cmo11g00277 834 MobiDBLite consensus disorder prediction 56 79 - -
Cmo11g00277 834 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 829 - -
Cmo11g00277 834 ProSiteProfiles CRM domain profile. 415 512 IPR001890 GO:0003723
Cmo11g00277 834 Coils Coil 745 772 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00277 - - - csv:101219948 1334.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00246 Cmo11g00277 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00277 Cmo-Chr11:1351036 Cmo14g00566 Cmo-Chr14:2880620 9.71E-24 dispersed
Cmo05g01365 Cmo-Chr5:10549068 Cmo11g00277 Cmo-Chr11:1351036 1.52E-06 transposed
Cmo10g00751 Cmo-Chr10:3480691 Cmo11g00277 Cmo-Chr11:1351036 4.50E-170 transposed
Cmo14g00637 Cmo-Chr14:3206753 Cmo11g00277 Cmo-Chr11:1351036 1.05E-155 transposed
Cmo14g01815 Cmo-Chr14:13855366 Cmo11g00277 Cmo-Chr11:1351036 1.35E-173 transposed
Cmo14g02062 Cmo-Chr14:15052207 Cmo11g00277 Cmo-Chr11:1351036 1.55E-07 transposed
Cmo15g00052 Cmo-Chr15:300313 Cmo11g00277 Cmo-Chr11:1351036 2.39E-147 transposed
Cmo10g00246 Cmo-Chr10:1097090 Cmo11g00277 Cmo-Chr11:1351036 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00277 Cmo_Chr11 FPKM 6.612213 8.359933 66.464027 67.822266 14.431702 11.648525 14.488464 28.678778 31.246016 32.399464