Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00282 ATGGATCCTGAGTTGCAGTCCTTCAAGCCATCCTTCTCCTTCCCTGACTTCACGGATCCCAATTTTGAGCTAATGGCTCACTATTCCGCTTCCAACCCAGCTGTTTTAGACAACCCATCTCTGAATTTCACCAACCTCTTGCCTTTCTCAAACGACATGTTCATCCCTCACCACCATCCCCCACCAGAATTCCCACAGAATTTAGGAGACTGTAACAGCTTCCAAATTATGCAGCAAGCCCCTCCGGATCCCCCAGCTTGCGCTGAATTTCATGAGATGAAGAAGAGAAGACCCATGGATGTTTCAGAGAGCAGCTCTGGAATTTCAACTTCAAATAGGTCAGGGAAAGGAAAGAGATTGAAAAGCATAGAGAAAGAAGAAGAGAAATCAAGAAGAGAAGTGGTGCATGTCAGAGCTAGAAGAGGGCAAGCCACTGATAGCCACAGCTTAGCTGAAAGGGTGAGACGAGGCAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGCATGGCAGTCATGTTGGATGAGATAATCAACTATGTCCAGTCTCTGCAGAATCAAGTAGAGTTCTTATCCATGAAATTAGCTGCAGCTAGCTCGTTCAACGACTTCAACTCGAAGGCCGACGCCCTATCGAAATTACAGGCAAGAGCACATGAAGCAAGAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAGTAGCTTGCTTCCACTCAACTTTGCCTCTTTGA 762 45.8 MDPELQSFKPSFSFPDFTDPNFELMAHYSASNPAVLDNPSLNFTNLLPFSNDMFIPHHHPPPEFPQNLGDCNSFQIMQQAPPDPPACAEFHEMKKRRPMDVSESSSGISTSNRSGKGKRLKSIEKEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFNDFNSKADALSKLQARAHEARELERLMREGYGGVACFHSTLPL 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1371030 1372415 - CmoCh11G002820.1 Cmo11g00282 390901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00282 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 209 IPR036638 GO:0046983
Cmo11g00282 253 CDD bHLH_AtBPE_like 134 215 - -
Cmo11g00282 253 PANTHER TRANSCRIPTION FACTOR BEE 1 6 252 - -
Cmo11g00282 253 SMART finulus 149 199 IPR011598 GO:0046983
Cmo11g00282 253 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 6 252 IPR024097 GO:0006355
Cmo11g00282 253 MobiDBLite consensus disorder prediction 102 116 - -
Cmo11g00282 253 MobiDBLite consensus disorder prediction 95 149 - -
Cmo11g00282 253 Gene3D - 138 214 IPR036638 GO:0046983
Cmo11g00282 253 MobiDBLite consensus disorder prediction 117 149 - -
Cmo11g00282 253 Pfam Helix-loop-helix DNA-binding domain 147 194 IPR011598 GO:0046983
Cmo11g00282 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 193 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00282 Cmo13g01064 CCT
Cmo11g00282 Cmo18g00036 CCT
Cmo11g00282 Cmo18g00036 ECH
Cmo11g00282 Cmo13g01064 ECH
Cmo10g00243 Cmo11g00282 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00282 Cmo-Chr11:1371030 Cmo15g00954 Cmo-Chr15:4914492 3.49E-48 dispersed
Cmo10g00243 Cmo-Chr10:1081086 Cmo11g00282 Cmo-Chr11:1371030 6.34E-87 wgd
Cmo11g00282 Cmo-Chr11:1371030 Cmo13g01064 Cmo-Chr13:8842441 6.79E-73 wgd
Cmo11g00282 Cmo-Chr11:1371030 Cmo18g00036 Cmo-Chr18:213740 7.18E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10538 PF00010 HLH 4.20E-05 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00282 - - csv:101209353 276.944