Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00287 ATGGCGACACCGTTGACAGGGCTACAACACCGGGACGGTGGCGGAGGAGTGGCTTTCTTGGCTAATTCTGTAAACAAAATGGATTCCGCCTCGTCTCCGTCGTCGCCAAATGATTGTCTGAGGAGCTCCGAGCCTCAGTCTCCGATTCTTATTTTTCTTTTCTTCCATAAAGCAATTCGCAATGAGCTCGATACGCTTCACCGGCTGGCCATGGCGTTCGCCACCGGCCAGAGAGCCGATATTCGCCCATTATTTGGACGATACCATTTTTTGAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATCTTTCCTGCACTTGATATTCGTGTGAAGAATGTGGCTCAGACCTATTCCCTTGAGCACAAGGGTGAAAGCAATCTGTTCGATCATCTTTTTGAGCTTCTTAATTCTAATACACAAAATGATGAAAGCTTCCCAAGGGAATTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCCTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTTCTGCCTTGGCTTTCATCATCTATTTCACCCGATGAATTTCAGGATCTACAGAAATGCTTAAACAAGGTGGTCCCCGAGGAAAAGCTTCTCCAACAGGTCATATTTACTTGGACGGAAGCGAGAAGTTGTGACTATGCATCAACAAGTTGCTTGGATGATTCTCAAGTTGGATATCATACAGATTCTACTACAAATACATCACATCATCAAATAGAAAATGTAAATTGTGCTTGTGAATCGACCAGCCGTGGGAAAAGAAAATATTTGGAGTCAAGTTCTGATACATCAGATTATGTGGCAACTCATCCGATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAATTGAATGACATTGCTGAAGAGGCTAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCAGAAGTTTGCATTTTTCATAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTCTACAGGAACACGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGAGCCTGATTGAAAAAATTCAAAGTGCAGGGGCTAATTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGCTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTTCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGACAACGGGAACTTTTGTATCAAAGCCTGTGCATGATGCCCTTGAAATTGATTGAACGTGTTTTGCCATGGCTGGTAGGATCATTGAAAGAAGATGAAGCTAGAGATCTTCTCGAGAACATGCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTTGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGTAATAATGGTTCGTGCCTGTCTTCAAGAGCAGTTGGTTGTTGTGCAGTTACAAGGCTCACTGACATTGAAGAAGACATTATTCAATCCTCCTGTTCTTGTACCCTTGCATTGATTGCAAGGGAAGGTCCAAAGTCAGATCCCGAAACTAATGTTACTGTTAAGAGGCCAGCCATACGCAATAATATTCCTATGCCATGCAAAACTTGTGATGGCCATATTGCTTCGGAGACTGTTAATGTCCAGCAACAGTGTTGTAGGGATCAGTCCTGCCGAGTTCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTCTCATGGGAAACAGATTGTGCGTCTTCTGATGTTGGGTCTGCAGGCCGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACCTGGAGTATTTAGACGTGGAATCTGGAAAACTTAGTGATTGTGGTGGAACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCGCTGGAATCCAAAGAGGCATTGCATAACGTAAGTCACTCGTATACACTAGATCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCTGAGATTTCATTCCTCCATGAAAGTCTGCATGAGGTTTCGTTGGATGAGAACTTTTCTAGGAGTGATGTTGGCTCTGTTAATGTGGCGGGGAAGGATTGTAATAGAAAGTACAATGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATTTTTAGGGAAGAACTTGAACTTTGGCCACTGTTTGGGAAACACTTCTCCGTGGAGGAGCAAGACAAAATAGTTGGTCGTATTATTGGGACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCACTTACTCAGGATGAACAGAATACTATGATGGATACATGGAAGCAAGCAACGAAAAACACCATGTTCAATGAATGGCTTAATGAATGTTGGAGAGGGACTGCTTCATCTACTCTAAATGGTGCAACATCGGAAGCTAGTGTTGCTGAAAAAGATTCTGGGCTTATTGGGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCAGCACAGCAGAAACTACCTCAAGCAAATGTAGAAGACAATTCCAATGGTGAAGATGTAGTGGGACGAACACCATCTTTTCGCTGTACTGAGAAAAAAGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTGTTTACTTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGCATGAACTGTCTAACAATTCAACCGGTTGGGCCAATATGCACAACACCTTCTTGCAATGGATTATCAATGGCAAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGTAACTTGTGCCGTGTTGGGAAGGGTCTTGGAATTGATTTCTTCCATTGCATGATTTGCAATTGCTGCCTTGGTATAAAGCTGGAGAACCACAAGTGCCTGGAGAAAAGTTTAGAGACCAATTGTCCCATCTGTTGTGACTTCTTATTTACATCCAGTGCAACAGTCAGACCGCTACCCTGTGGTCATTACATGCATTCAGCATGCTTTCAGGCATACACATGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTCGGCATGCTTGACGCCCTGTTGGCTACTGAGGAGCTGCCAGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGCGGAAAGGCGCATCAAGGTTTCATTGGTTGTATCATAAATGTGGGTATTGTGGATCATACAACACCCGGGTAATCAAGAACGATGCATACGCGGGCTGCCCCTCTTCCAACCAATGA 3771 42.75 MATPLTGLQHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFGRYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSISPDEFQDLQKCLNKVVPEEKLLQQVIFTWTEARSCDYASTSCLDDSQVGYHTDSTTNTSHHQIENVNCACESTSRGKRKYLESSSDTSDYVATHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRSLIEKIQSAGANSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDLLENMQLAAPAKDTALVTLFSGWACKARNNGSCLSSRAVGCCAVTRLTDIEEDIIQSSCSCTLALIAREGPKSDPETNVTVKRPAIRNNIPMPCKTCDGHIASETVNVQQQCCRDQSCRVPALGVNSKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDCASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCGGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEISFLHESLHEVSLDENFSRSDVGSVNVAGKDCNRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASSTLNGATSEASVAEKDSGLIGSLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGEDVVGRTPSFRCTEKKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLENHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEELPEEYRDRCQDILCNDCERKGASRFHWLYHKCGYCGSYNTRVIKNDAYAGCPSSNQ 1256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1390582 1400439 - CmoCh11G002870.1 Cmo11g00287 390906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00287 1256 ProSiteProfiles Zinc finger CTCHY-type profile. 1073 1136 IPR017921 -
Cmo11g00287 1256 CDD Hr-like 51 177 - -
Cmo11g00287 1256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1130 1181 IPR013083 -
Cmo11g00287 1256 Pfam Hemerythrin HHE cation binding domain 53 179 IPR012312 -
Cmo11g00287 1256 Pfam Hemerythrin HHE cation binding domain 661 824 IPR012312 -
Cmo11g00287 1256 Pfam Hemerythrin HHE cation binding domain 309 443 IPR012312 -
Cmo11g00287 1256 Gene3D - 1208 1248 - -
Cmo11g00287 1256 CDD RING-H2_Pirh2 1136 1179 - -
Cmo11g00287 1256 ProSiteProfiles Zinc finger RING-type profile. 1137 1179 IPR001841 -
Cmo11g00287 1256 PANTHER CHY ZINC FINGER PROTEIN 30 1248 - -
Cmo11g00287 1256 Gene3D nmb1532 protein domain like 656 888 - -
Cmo11g00287 1256 SUPERFAMILY CHY zinc finger-like 1002 1064 IPR037274 GO:0008270
Cmo11g00287 1256 Pfam CHY zinc finger 1008 1083 IPR008913 GO:0008270
Cmo11g00287 1256 Gene3D nmb1532 protein domain like 312 459 - -
Cmo11g00287 1256 Gene3D nmb1532 protein domain like 46 196 - -
Cmo11g00287 1256 CDD Hr-like 663 823 - -
Cmo11g00287 1256 SUPERFAMILY Zinc hairpin stack 1074 1130 IPR037275 -
Cmo11g00287 1256 CDD Hr-like 313 441 - -
Cmo11g00287 1256 SUPERFAMILY RING/U-box 1136 1182 - -
Cmo11g00287 1256 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 1248 - -
Cmo11g00287 1256 Pfam Zinc-ribbon 1184 1241 IPR039512 -
Cmo11g00287 1256 SMART ring_2 1137 1178 IPR001841 -
Cmo11g00287 1256 ProSiteProfiles Zinc finger CHY-type profile. 1001 1070 IPR008913 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00326 Cmo11g00287 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00184 Cmo-Chr10:837219 Cmo11g00287 Cmo-Chr11:1390582 8.53E-08 dispersed
Cmo11g00287 Cmo-Chr11:1390582 Cmo14g01678 Cmo-Chr14:13218745 2.37E-55 dispersed
Cmo10g00185 Cmo-Chr10:838715 Cmo11g00287 Cmo-Chr11:1390582 1.14E-12 transposed
Cmo10g00326 Cmo-Chr10:1467626 Cmo11g00287 Cmo-Chr11:1390582 0 wgd
Cmo11g00287 Cmo-Chr11:1390582 Cmo04g01568 Cmo-Chr4:8015730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00287 K16276 - csv:101215023 2382.06