Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00288 ATGGCATCCAAGCTCCAAATCCTCTTCAAACCAACTCTGTTTTGCTTCTTAACATTCATCTTCTCGACCTCAGCTGTGCCGGATCATAAGCTCAACCCCTGTCCGCCTAAAAGCTGTGGATATGGTCCAAATATAAGTTACCCCTTTTGGATAGATGGCGTGCACGAACCTTCCTGCGGAGACCCGGATTTCAAAATCAAATGCAATGAATATCAGTACCCAGTTCTTGAAATTTCCGATGAAGATTTTATCATCCAAAACATTTTCCCCCAAAACCATTCGTTTCTTTTGGCCAGTGCTGCAGCTTACGAGCAACCTTCATGCCCCTCGCATAATATTAGCCTCCATGGAAAACCCTTTTATTTCACTTCGGATACTGAAGATTTGTTCTTCTTTTATGATTGCCCATCAAAGCCTGGGGGTTACATCTTTGAACTGAATTGTAATTCCGATGAAACCCACTTCTCTTTTGCGATTTTCCACAAGGGTCTTGTGGAGTTGGAGAAATCTCGCTTGCAGTCTTGCCAGTCTATGATTCTTGTTCCTATCCGCAAGAACTCGATGGCTAGAGATGATTTGGGGAAATTGGGTTACGTTGACATTTTGAAAATGGGTTTTGTTCTGAATTGGAACTGCAACGATTGTAAGCGAAGTGGTGGGTTTTGTACATTTCAAAACAATCTGTTTATGCGAAATGGCAACGCAAGGAGAAACAACATTATCATTGGTACGTGCATTGGCTTTGGAGCCTTGCTTTTGTGTATAATTGTTCTATGCATCTGCTACCGACGACGCCAGCTCCGTCGTAAACGTTCTCACGCCGCCGTACCGTATGCACAACGGAGCATTCCCTTGAATCCGTCAAATCCCCATTCTGTGGAAGAGCTTGAGAAGGGAGATTCATACTTGGGCGTTCATCTTTTCTCTTATAAAGAACTTGAAGAAGCCACCAACCATTTTGACTCCAATAAAGAGCTTGGAGATGGAGGCTTTGGCACGGTTTATTATGGCTTACTCAAAGATGGGCGTGCCGTTGCTGTCAAAAGGTTGTTTGAAAGCAATTTCAGGAGAGTTGAGCAGTTCATGAATGAGGTGGAGATCCTAGCCCGCCTGCGCCATCGTAACCTCGTTTCGCTTTACGGTTGCACCTCACGGAACAGCCGTGAGCTTCTGCTTGTGTATGAATACGTCTCGAATGGCACGGTGGCCGATAATCTCCATGGAAAGCTAGCAAAGCCTGGAAAGCTTCCATGGTCTACAAGAATGAAGATTGCTATAGAGACTGCAAGTGCTTTGGTGTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATTCTCCTTGACAACAACTTTTGTGTTAAAGTAGCCGATTTCGGTTTGTCCCGTCTCTTCCCGCTCGATGTCACGCATGTCTCAACCGCTCCACAAGGCACTCCTGGCTATGTCGATCCGGAGTACCATCAGTGTTACCAACTCTCTGATAAAAGCGATGTCTTTAGCTTCGGTGTGGTACTAGTTGAACTCATATCCTCAATGCCTGCTGTTGACATCACAAGGCACAGACAAGAGATCAATCTATTCAACATGGCTATCAAAAAAATCCAAAGCCACGCGTTGAATGAACTCGTCGACCCTTCACTCGGTTTCGAAACGGACTACAAGATCCAAAACATGATCACCGGAGTAGCTGAGTTGGCATTTCGATGCCTACAGAGCATGAAAGATGAGAGGCCAACAATGATGGAAGTTCTTGACACTCTGAACATCATACAGAAACAGAACGCCGAGAAAGGGAATGATCGCGATACCGACATTTCTGCTAAGGACGACGCCGTGCTACTGAAGAATGGCTATGGATCTTCTCCAAGCTCCCTGTCTGTATCTTGGGTTAGCAGTAACACCTCCACAGCAACGAATGAAACTGTCAGTGCCTAA 1950 45.23 MASKLQILFKPTLFCFLTFIFSTSAVPDHKLNPCPPKSCGYGPNISYPFWIDGVHEPSCGDPDFKIKCNEYQYPVLEISDEDFIIQNIFPQNHSFLLASAAAYEQPSCPSHNISLHGKPFYFTSDTEDLFFFYDCPSKPGGYIFELNCNSDETHFSFAIFHKGLVELEKSRLQSCQSMILVPIRKNSMARDDLGKLGYVDILKMGFVLNWNCNDCKRSGGFCTFQNNLFMRNGNARRNNIIIGTCIGFGALLLCIIVLCICYRRRQLRRKRSHAAVPYAQRSIPLNPSNPHSVEELEKGDSYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYYGLLKDGRAVAVKRLFESNFRRVEQFMNEVEILARLRHRNLVSLYGCTSRNSRELLLVYEYVSNGTVADNLHGKLAKPGKLPWSTRMKIAIETASALVYLHASEIIHRDVKTNNILLDNNFCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELISSMPAVDITRHRQEINLFNMAIKKIQSHALNELVDPSLGFETDYKIQNMITGVAELAFRCLQSMKDERPTMMEVLDTLNIIQKQNAEKGNDRDTDISAKDDAVLLKNGYGSSPSSLSVSWVSSNTSTATNETVSA 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1407876 1410242 - CmoCh11G002880.1 Cmo11g00288 390907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00288 649 Pfam Wall-associated receptor kinase C-terminal 148 227 IPR032872 -
Cmo11g00288 649 Pfam Wall-associated receptor kinase galacturonan-binding 34 97 IPR025287 GO:0030247
Cmo11g00288 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Cmo11g00288 649 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 4 637 - -
Cmo11g00288 649 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Cmo11g00288 649 SUPERFAMILY Protein kinase-like (PK-like) 301 590 IPR011009 -
Cmo11g00288 649 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 637 IPR044652 -
Cmo11g00288 649 Pfam Protein kinase domain 321 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00288 649 Gene3D Transferase(Phosphotransferase) domain 1 397 619 - -
Cmo11g00288 649 ProSiteProfiles Protein kinase domain profile. 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00288 649 SMART serkin_6 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00288 649 MobiDBLite consensus disorder prediction 622 649 - -
Cmo11g00288 649 Gene3D Phosphorylase Kinase; domain 1 292 396 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00288 Cmo13g01055 CCT
Cmo11g00288 Cmo13g01055 ECH
Cmo10g00329 Cmo11g00288 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00425 Cmo-Chr1:2081165 Cmo11g00288 Cmo-Chr11:1407876 2.16E-150 dispersed
Cmo11g00288 Cmo-Chr11:1407876 Cmo13g01052 Cmo-Chr13:8782180 0 dispersed
Cmo18g01212 Cmo-Chr18:12059910 Cmo11g00288 Cmo-Chr11:1407876 9.94E-88 dispersed
Cmo10g00329 Cmo-Chr10:1483079 Cmo11g00288 Cmo-Chr11:1407876 0 wgd
Cmo11g00288 Cmo-Chr11:1407876 Cmo13g01051 Cmo-Chr13:8779611 6.50E-10 wgd
Cmo11g00288 Cmo-Chr11:1407876 Cmo18g01011 Cmo-Chr18:10976821 7.76E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74645 PF00069 Pkinase 1.70E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00288 - - cmo:103494139 942.184