Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00292 ATGAGTTCCACTGGGTTCTTTATGCCATTGGAATCCGATACTGCGTCCAGATACTGTCCATTATTCGACTTTCGAAGCAACCGGAAGGAGAAATCATCGATACCCATTTCGCGGTTGTGTGTGAAAATGAAGGCGGCGACAGTACCGTTCGAGTCAGGTATGAGCTTCGGGTTCAAGAATTTGATGGAAACGTTCACGGTGAATGTGCAGAGAGCAGAAAGTAGGGCACTGAATGTTCCATTGTTTGAGCCGTTTACTATTGCGTCTTCGAGGCTTGAAATGGTGGAGAACGTAGCGATAAGGATCGAGTTGAGTAATGGGTGCGTCGGATGGGGTGAGGCGCCGATTTTGCCTTTTGTCACTGCGGAGGATCAGCCTACCGCGATAACGAAGGCAGGGGAGGTTGGTGAACTATTGCAGCAGAGACCACCGTGTAATTTGGGCTCAGCGATGATGCAGATCGGCGAGACTCTTCCTGGCCATGAATTTGCTTCTGTTAGAGCAGGAGTTGAGATGGCATTGATTGATGCAGTTGCCAACAGCATTAATATACCTCTATGGAGATTGTTTGGTGGAGTTTCAAACAGTATAACCACCGACATAACAATTCCTATTACTTCTGCTTCTAATGCTGCCAAATTAGCTGCGAAATATCGAGATCAAGGATTCAAGACGTTGAAGTTGAAGGTAGGAAAGGATCTAAGAGCTGATATAGAAGTTCTGCAGCGCATCAGAACGGTTCATTCTGATTGCGAATTCATCCTGGATGCCAATGAGGGATATGACACTGAGGAAGCTATTCAAGTTCTTGATAAGTTACATGAATTGGGGGTGACTCCGACTCTGTTTGAACAACCAGTTCATAGAGACAACTGGGAGGGTCTCGGAATTGTTAGTCGTATCGCTAGAGATAAATACGGGGTATCTGTTGCAGCTGATGAGAGCTGCCGGAGTTTAAGTGATGTTAAGAGAATAGTGGAAGAGGATCTTGCAGATGTTATAAATATAAAGCTTGCCAAAGTTGGAGTTTTGGGGGCAATTGAAATTATTGAAGTAGCAAGGGCTGCTGGATTGAGTTTAATGATTGGTGGTATGATAGAGACTCGACTTGCCATGGGCTTTTCCGGTCATCTTGCTGCTGGTCTCGGATACATCGACTTAGATACACCACTTTTATTGTCAGAAGATCCAGTTCATGGGGGTTATGAAGTTTCTGGTGCTGTCTACAAGTTCACAAATGCCAGAGGCCATGGTGGTTTCCTTCACTGGGATAACCTTGCTTGGTAA 1287 45.38 MSSTGFFMPLESDTASRYCPLFDFRSNRKEKSSIPISRLCVKMKAATVPFESGMSFGFKNLMETFTVNVQRAESRALNVPLFEPFTIASSRLEMVENVAIRIELSNGCVGWGEAPILPFVTAEDQPTAITKAGEVGELLQQRPPCNLGSAMMQIGETLPGHEFASVRAGVEMALIDAVANSINIPLWRLFGGVSNSITTDITIPITSASNAAKLAAKYRDQGFKTLKLKVGKDLRADIEVLQRIRTVHSDCEFILDANEGYDTEEAIQVLDKLHELGVTPTLFEQPVHRDNWEGLGIVSRIARDKYGVSVAADESCRSLSDVKRIVEEDLADVINIKLAKVGVLGAIEIIEVARAAGLSLMIGGMIETRLAMGFSGHLAAGLGYIDLDTPLLLSEDPVHGGYEVSGAVYKFTNARGHGGFLHWDNLAW 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1418338 1420416 - CmoCh11G002920.1 Cmo11g00292 390911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00292 428 SFLD muconate cycloisomerase 69 421 - -
Cmo11g00292 428 CDD L-Ala-DL-Glu_epimerase 71 393 IPR034603 GO:0016855
Cmo11g00292 428 PANTHER O-SUCCINYLBENZOATE SYNTHASE-RELATED 54 427 - -
Cmo11g00292 428 Pfam Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 79 191 IPR013341 -
Cmo11g00292 428 Gene3D - 183 414 IPR036849 -
Cmo11g00292 428 PANTHER O-SUCCINYLBENZOATE SYNTHASE 54 427 - -
Cmo11g00292 428 Pfam Enolase C-terminal domain-like 213 418 IPR029065 -
Cmo11g00292 428 SUPERFAMILY Enolase N-terminal domain-like 68 192 IPR029017 -
Cmo11g00292 428 SUPERFAMILY Enolase C-terminal domain-like 182 427 IPR036849 -
Cmo11g00292 428 SMART MR_MLE_2 208 302 IPR013342 -
Cmo11g00292 428 Gene3D - 76 182 IPR029017 -
Cmo11g00292 428 SFLD Enolase 69 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00292 - - - csv:101215507 712.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00292 Cmo-Chr11:1418338 Cmo15g00056 Cmo-Chr15:313512 9.37E-149 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g284 . . . . . . . . . . . Cma11g00289 . Car11g00263 . . Cpe04g01391 . . . . . . . Cla06g01449 Cam06g1602 Cec06g1664 Cco06g1658 Clacu06g1567 Cmu06g1520 Cre06g2331 . . . . . . . . . . . . . . . . . . Cmo11g00292 . . . . . . . . . . . . . . . . . . . . Lsi06g01315 Csa01g00401 Chy02g02348 Cme02g01725
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002956 1 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00292 Cmo_Chr11 FPKM 0.0 0.0 0.0 0.0 0.830111 0.0 0.0 0.0 0.0 0.0