Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00299 ATGGCCGATAGCGCTAAATCAGTTCTTGAAGAGGAAACTTCGAAGCTTGAAACCAAGTCCAAGCGCGGCGTAGATGTCGAGGATGCTGATGTCACTGTGAAGAAGTTTAAAACGGAAGCTACTGCCGATGTAGCCGACAAAACTGGAGACTGTGCCGGCAGGAAGTTGGAAGCTGTTAATGGTGATGAAGAAAATAAGGTCATCAGGATGGGAGTCAAGTTTGAGATTGAAGCGGATGCAGCAGAAGATAAAGGGTCCAGGCATACAATGGAGGATGCTTGGGTTTTGCTTTTGGATGCGAGCTTGGATTTTCCTGGGAAATTGAGATGTGCACATTTTGCTATCTATGATGGACATGGAGGTCGGTTAGCTGCCGAGTACGCTCAAAAGCATTTGCATATGAATGTTCTCTCAGCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAAAAGGCAATACTTGATGGGTTCCGGAAAACTGATGAGTCTCTTCTTCAAGAAAGTTCTGCTGGGGGATGGCAGGATGGTGCTACTGCTGTTTGCGTTTGGGTATTAGGTCAAACGGTTTTTGTTGCTAATGTTGGTGATGCTAAAGCAGTTGTAGCACGATCTTCGACTACTGATAAATTGTCTAATAATCTTAATGGAGGAAGCTCTTTAAAGGCTATTGTTTTGACAAGGGAACACAAGGCAATCTACCCACAAGAAAGAGCTCGTATTCAAAAGGCTGGTGGCATTGTTGGTTCAAATGGTCGATTGCAGGGCCGTCTTGAAGTTTCTCGGGCACTCGGAGATCGCCAATTTAAAAAGTTGGGCGTTATAGCAACTCCAGACATTCATTCTTTTGAATTGACTGATAGGGAGCATTTTATCATTCTCGGATGTGATGGACTTTGGGGGGTTTTTGGACCAAGCGATGCTGTCGATTTTGTCCAGAAATTATTGCAGGAGGGCTTGCCCATAACATCAGTAAGTCGACATCTTGTGAGGGAAGCTATTCGTGAACGGCGCTGTAAAGATAACTGTACTGCAATGGTCATTGTTTTCAGGCCCAAGTGA 1065 44.79 MADSAKSVLEEETSKLETKSKRGVDVEDADVTVKKFKTEATADVADKTGDCAGRKLEAVNGDEENKVIRMGVKFEIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEYAQKHLHMNVLSAGLPRELLDVKATKKAILDGFRKTDESLLQESSAGGWQDGATAVCVWVLGQTVFVANVGDAKAVVARSSTTDKLSNNLNGGSSLKAIVLTREHKAIYPQERARIQKAGGIVGSNGRLQGRLEVSRALGDRQFKKLGVIATPDIHSFELTDREHFIILGCDGLWGVFGPSDAVDFVQKLLQEGLPITSVSRHLVREAIRERRCKDNCTAMVIVFRPK 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1438182 1445971 + CmoCh11G002990.1 Cmo11g00299 390918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00299 354 Pfam Protein phosphatase 2C 81 340 IPR001932 -
Cmo11g00299 354 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 22 348 - -
Cmo11g00299 354 Gene3D - 59 352 IPR036457 -
Cmo11g00299 354 MobiDBLite consensus disorder prediction 1 22 - -
Cmo11g00299 354 ProSiteProfiles PPM-type phosphatase domain profile. 77 351 IPR001932 -
Cmo11g00299 354 CDD PP2Cc 81 351 IPR001932 -
Cmo11g00299 354 PANTHER PROTEIN PHOSPHATASE 2C 22 348 IPR015655 GO:0004722|GO:0006470
Cmo11g00299 354 SMART PP2C_4 59 349 IPR001932 -
Cmo11g00299 354 SUPERFAMILY PP2C-like 71 352 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00299 Cmo-Chr11:1438182 Cmo16g00070 Cmo-Chr16:317145 4.96E-34 dispersed
Cmo11g00299 Cmo-Chr11:1438182 Cmo09g00041 Cmo-Chr9:173255 2.29E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00299 K17500 - csv:101216467 608.601