Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00303 ATGGCTGAGCTCGATCCATCAAAGAAAGTGGCTGACAGATATTTAAAGCGTGAGGTTCTCGGAGAGGGTACCTATGGCGTTGTATATAAGGCCATTGATACCCAGACAGGTCAGACGGTTGCAATCAAGAAAATTCGGCTTGGCAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCATAAAGAAAATTTGCATCTTGTTTTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGTGATCGAAATATATTTCTTTCCCCAGCTGACATAAAATCATACCTTCAGATGACGTTGAAAGGCCTTGCTTTTTGCCACAAGAAGTGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGACCGAATGGTCAACTGAAACTTGCAGATTTTGGTTTGGCTAGGATATTTGGGAGTCCTGATCGTAGATATACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGCTCTAAGCAGTATGGTTCTGCAGTGGATGTTTGGGCAGCAGCATGTATTTTTGCTGAACTACTACTTCGTAGACCTTTTCTTCAGGGTTCGAGCGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCGACAACTTCTCAGTGGTCTGATATGTTATACCTACCTGATTATGTGGAGTTCCAATATGTTCCTGCACCTCCTCTACGTTCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCTTATGATCCAAAGTTTAGAATTTCCATTCAGCAAGCATTGGAGCATAGGTACTTCACATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTATGAACCCTAGAGTTTCAGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCAAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGCATGTAAAGCTGATAAGCTTGATGACCATGGTAATGAGGTGCGAGAGGCAGCTGCTGGAAATACAAGCAAAAATGAAGCAGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACCGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 1251 41.49 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKENLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRYTHQVFARWYRAPELLFGSKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTTSQWSDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKFRISIQQALEHRYFTSAPLPTDPSKLPRPTSKREPMNPRVSDLNSNEGPTVLSPPRKSRRVMPEREAFEGNACKADKLDDHGNEVREAAAGNTSKNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1460967 1465189 - CmoCh11G003030.1 Cmo11g00303 390922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00303 416 MobiDBLite consensus disorder prediction 384 416 - -
Cmo11g00303 416 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Cmo11g00303 416 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00303 416 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00303 416 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 360 - -
Cmo11g00303 416 MobiDBLite consensus disorder prediction 296 342 - -
Cmo11g00303 416 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Cmo11g00303 416 PANTHER CELL DIVISION PROTEIN KINASE 9 360 - -
Cmo11g00303 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Cmo11g00303 416 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Cmo11g00303 416 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Cmo11g00303 416 MobiDBLite consensus disorder prediction 317 332 - -
Cmo11g00303 416 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00303 416 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Cmo11g00303 416 MobiDBLite consensus disorder prediction 401 416 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00341 Cmo11g00303 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00303 Cmo-Chr11:1460967 Cmo18g00940 Cmo-Chr18:10556806 6.16E-89 dispersed
Cmo10g00341 Cmo-Chr10:1537400 Cmo11g00303 Cmo-Chr11:1460967 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74646 PF00069 Pkinase 1.70E-71 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00303 K02202 - csv:101217645 791.956