Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00305 ATGGCGGAAGGGCTCGTTCTCCGGGGAACGATGAGGGCTCACACGGATATGGTCACGGCCATAGCCACTCCGGTTGACAATTCCGATATGATCGTCACCTCTTCCCGTGACAAATCCATCATCTTGTGGCGTCTCACTAAGGAGGAGAAGACCTACGGTGTTCCTCAGCGTAGGCTCAATGGCCACTCCCACTTCGTTCAGGATGTTGTTCTCTCTTCCGACGGTCAGTTCGCTCTCTCTGGTTCCTGGGACGGAGAGCTCCGCCTTTGGGACCTCGCCACGGGCGTTACCTCCCGTCGATTTGTTGGTCATTCGAAGGATGTTCTCTCTGTTGCCTTCTCCATTGACAATCGTCAGATCGTCTCGGCCTCTCGTGACCGAACGATCAAGCTGTGGAATACACTCGGTGAGTGCAAGTACACAATCCAGGATGGTGACGCACACAGTGACTGGGTTAGCTGTGTTAGATTCAGCCCTAACACTCTCTTGCCGACGATTGTTTCGGCGTCTTGGGACAAGACCGTGAAGGTTTGGAATTTGACTAATTGCAAGTTGAGAGTGACTCTTGCTGGTCATGCTGGTTATGTCAACACGGTGGCTGTCTCTCCTGATGGGTCGCTTTGCGCCAGTGGAGGCAAAGACGGAGTGATTTTGCTGTGGGATTTGGCCGAGGGTAAGAAGCTCTATTCATTGGATGCCGGATCGATTATTCATGCTCTTTGTTTCAGCCCCAACAGGTACTGGCTCTGTGCTGCGACTGAGAGCAGTATTAAGATCTGGGACTTGGAGAGCAAGAGCATCGTGGAGGACTTGAAAGTCGATTTAAAAACCGAGGCGGAGAAAACTGATGACACCCATGCTGCAACCGCCAACAAGATTAAGGTTATCTACTGCACAAGTTTGAGCTGGAGTGCAGATGGGAGCACATTGTTTAGTGGCTATACAGACGGAGTGATCAGAGTTTGGGGCATTGGTCGCTACTAG 984 51.73 MAEGLVLRGTMRAHTDMVTAIATPVDNSDMIVTSSRDKSIILWRLTKEEKTYGVPQRRLNGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGVTSRRFVGHSKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPNTLLPTIVSASWDKTVKVWNLTNCKLRVTLAGHAGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAEKTDDTHAATANKIKVIYCTSLSWSADGSTLFSGYTDGVIRVWGIGRY 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1476833 1478966 + CmoCh11G003050.1 Cmo11g00305 390924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00305 327 CDD WD40 7 322 - -
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 327 IPR001680 GO:0005515
Cmo11g00305 327 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 327 IPR045223 GO:0015935|GO:0043022
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 327 - -
Cmo11g00305 327 SUPERFAMILY WD40 repeat-like 5 322 IPR036322 GO:0005515
Cmo11g00305 327 Pfam WD domain, G-beta repeat 188 221 IPR001680 GO:0005515
Cmo11g00305 327 Pfam WD domain, G-beta repeat 54 91 IPR001680 GO:0005515
Cmo11g00305 327 Pfam WD domain, G-beta repeat 299 322 IPR001680 GO:0005515
Cmo11g00305 327 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Cmo11g00305 327 Pfam WD domain, G-beta repeat 227 261 IPR001680 GO:0005515
Cmo11g00305 327 Pfam WD domain, G-beta repeat 98 133 IPR001680 GO:0005515
Cmo11g00305 327 Pfam WD domain, G-beta repeat 146 179 IPR001680 GO:0005515
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 95 - -
Cmo11g00305 327 SMART WD40_4 182 221 IPR001680 GO:0005515
Cmo11g00305 327 SMART WD40_4 224 261 IPR001680 GO:0005515
Cmo11g00305 327 SMART WD40_4 289 323 IPR001680 GO:0005515
Cmo11g00305 327 SMART WD40_4 52 91 IPR001680 GO:0005515
Cmo11g00305 327 SMART WD40_4 94 133 IPR001680 GO:0005515
Cmo11g00305 327 SMART WD40_4 4 44 IPR001680 GO:0005515
Cmo11g00305 327 SMART WD40_4 135 179 IPR001680 GO:0005515
Cmo11g00305 327 Gene3D - 4 327 IPR015943 GO:0005515
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Cmo11g00305 327 PANTHER BNAA06G12310D PROTEIN 1 327 - -
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Cmo11g00305 327 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Cmo11g00305 327 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Cmo11g00305 327 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Cmo11g00305 327 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Cmo11g00305 327 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Cmo11g00305 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Cmo11g00305 327 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00344 Cmo11g00305 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01836 Cmo-Chr1:13417242 Cmo11g00305 Cmo-Chr11:1476833 3.80E-06 dispersed
Cmo09g00290 Cmo-Chr9:1279341 Cmo11g00305 Cmo-Chr11:1476833 3.73E-06 dispersed
Cmo11g00305 Cmo-Chr11:1476833 Cmo08g00339 Cmo-Chr8:2095602 7.26E-11 dispersed
Cmo10g00343 Cmo-Chr10:1548935 Cmo11g00305 Cmo-Chr11:1476833 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00305 K14753 - csv:101216713 656.751