Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00311 ATGGGGAGTGGAACTCTCGTAGATGGTGTTCGTCGCTGGTTTCAACGTCGCATTACTTCCTCTTCCTCCTCCTCTTCTTCTTCTTCTTCTAATTTAGGACGTAATTCTGATTCTAATCTCAATTACCCATATAATAATAAGCTCGATTATGTGGATAATGGCGAAAATGGTAACCAATTGTTGAGTAGCGATTTACGCGCCCAATCGACCATTCTTCCCCCCAAACGCAAACGTTTACGGAAGCAACCCCATCCCGGAGGAGAAGGCATTCTTGAGCGATTATCTGAGGAGGAGGACGATGATGTCGACGACCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAGCGGACCAATCATTTCAGAGCTCCTCCTCCTCCTCCTCCTCTTCCCGCTATAATGGATTCCCACAAGAAGGGTGGATTGGAAACAGAATTTTTCACAGAGTATGGAGAAGCCAGCAGATATCAGGTTCAAGAAATAATTGGTAAAGGAAGCTACGGGGTTGTCGGTTCTGCCATTGATACACATACTGATGAGAAGGTCGCAATCAAGAAAATTAATGATGTTTTTGAGCACGTTTCTGATGCCACAAGAATATTAAGAGAAATTAAACTCCTACGGCTGCTTCGACATCCAGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTCCACCAAGTAATCAAGGCCAACGATGATCTCACTCCTGAGCACCATCAATTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACACACAGCAAATGTATTTCATCGTGATTTGAAGCCCAAAAACATTTTAGCTAATGCTGACTGCAAACTGAAAATATGTGATTTTGGACTCGCTCGTGTGTCGTTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCGACCCGGTGGTATCGTGCTCCTGAACTTTGTGGCTCTTTTTTCTCAAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAAGCCACTGTTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTGATGACTGATGTGCTTGGCACGCCTTCGGCTGAGTCCATTGCTAGGATTCGAAATGAAAAGGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTCCCTAATGCCGATCCCTTGGCTCTCTGCTTGCTTCAACGCCTGCTTGCATTTGATCCCAAAGACCGTCCTACAGCTGAAGAGGCATTAGCGGATCCTTACTTTCATGGTTTGGCGAACGTGGATCGCGAACCATCAACTCAACCGATTTCAAAACTTGAATTTGAATTTGAGAGAAGAAAGTTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTGCAAGAATATCTCCGCAGTGGAGAACAAACTAGTTTCATGTACCCAAGTGGCGTCGATCGTTTCAAACGCCAGTTTGCGCATCTGGAGGAACATTATGGTAAGGGTGAAAGAAGTTCTCCACTTCAAAGACAGCATGCTTCATTGCCCAGGGAAAGGGTTTGTGCACCCAAAGATGAGGCTGCACAGCACGAGGATTTAGAAGGAAGAAATGGTGTATATGTTGCTTCAACTCTTCAGAGTCCCCCAAGGTCGCAGCAAGGTGATGGTTCGGAAAATGCAAACAGTAACGAACAAAATGGACAAAGCAAGCCAAATTACAGTGCTCGTAGCTTGTTGAAAAGTGCCAGCATCAGTGCCTCTAAATGTATAGGTGTCAAACCAAAAAAGGAACTAGAGGAGGAACCGATTACGGAGGTTAACGACGAGGCAATTGACGGGTTGTCTCAGAAGGTTTCGGCCTTGCATACTTGA 1959 43.7 MGSGTLVDGVRRWFQRRITSSSSSSSSSSSNLGRNSDSNLNYPYNNKLDYVDNGENGNQLLSSDLRAQSTILPPKRKRLRKQPHPGGEGILERLSEEEDDDVDDLDYSALKLIKVPKRTNHFRAPPPPPPLPAIMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKQPVPLTQKFPNADPLALCLLQRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSSPLQRQHASLPRERVCAPKDEAAQHEDLEGRNGVYVASTLQSPPRSQQGDGSENANSNEQNGQSKPNYSARSLLKSASISASKCIGVKPKKELEEEPITEVNDEAIDGLSQKVSALHT 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1499676 1504386 - CmoCh11G003110.1 Cmo11g00311 390930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00311 652 Gene3D Phosphorylase Kinase; domain 1 173 494 - -
Cmo11g00311 652 ProSiteProfiles Protein kinase domain profile. 157 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00311 652 CDD STKc_TDY_MAPK 156 493 - -
Cmo11g00311 652 SUPERFAMILY Protein kinase-like (PK-like) 153 453 IPR011009 -
Cmo11g00311 652 MobiDBLite consensus disorder prediction 619 652 - -
Cmo11g00311 652 SMART serkin_6 157 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00311 652 MobiDBLite consensus disorder prediction 528 553 - -
Cmo11g00311 652 Gene3D Transferase(Phosphotransferase) domain 1 243 471 - -
Cmo11g00311 652 ProSitePatterns Protein kinases ATP-binding region signature. 163 187 IPR017441 GO:0005524
Cmo11g00311 652 MobiDBLite consensus disorder prediction 18 69 - -
Cmo11g00311 652 ProSitePatterns MAP kinase signature. 192 295 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo11g00311 652 MobiDBLite consensus disorder prediction 574 607 - -
Cmo11g00311 652 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 123 581 - -
Cmo11g00311 652 Pfam Protein kinase domain 157 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00311 652 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 123 581 - -
Cmo11g00311 652 MobiDBLite consensus disorder prediction 18 98 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00311 Cmo18g00049 CCT
Cmo11g00311 Cmo13g01034 CCT
Cmo11g00311 Cmo13g01034 ECH
Cmo11g00311 Cmo18g00049 ECH
Cmo10g00349 Cmo11g00311 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00039 Cmo-Chr4:237448 Cmo11g00311 Cmo-Chr11:1499676 0 dispersed
Cmo04g01071 Cmo-Chr4:5368638 Cmo11g00311 Cmo-Chr11:1499676 0 dispersed
Cmo08g01148 Cmo-Chr8:7341665 Cmo11g00311 Cmo-Chr11:1499676 0 dispersed
Cmo10g00349 Cmo-Chr10:1579520 Cmo11g00311 Cmo-Chr11:1499676 0 dispersed
Cmo11g00311 Cmo-Chr11:1499676 Cmo17g00265 Cmo-Chr17:1582906 0 dispersed
Cmo11g00311 Cmo-Chr11:1499676 Cmo13g01034 Cmo-Chr13:8708506 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74647 PF00069 Pkinase 6.40E-68 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00311 - - cpep:111793155 1240.33