Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00316 ATGTGGACTTTGGGACATGACGATAATGGTGCACAATTTTGCTTCTCTCAGCCCTTTCATGGCGGCCGCAAGCTTCGCCCTCTTGTCCCTCGCCCCTTGCCTTCTCTTCGCCTCAATGCTGCCAACCTCCCTTCACCATATTACCATCTAGCTAATCTTTTGAATGATCAAAGCAAGAGAGAGTTGTTGAATAATGATGATAATGGTTTATCTTCTCCACCGGTAGTGGTAAGCTCATCAAGGTGGAATCCAACGCCGGAGCAGTTGAGAATTTTGGAGGAGCTTTACCGGCGGGGGACCCGAACGCCGTCCGCCGACCAAATCCAACATATCACCGCCCAGCTCCGCCGCTTCGGCAAAATTGAAGGCAAAAACGTCTTCTATTGGTTTCAAAATCATAAGGCTAGAGAGCGGCAAAAACGACGCCGTCAAACGGCCGCTGAAGAACACAAATATTCAGAGACAGAAAAAGGGTACGAAATTGAACAGACAAAGACGAACCGGCCTCGGCCAACTCCACCACCCTCTAACCTCTGCAGTAATACCACACTTTCACAGGAATGTGCAAAAATCCAAAGAACAACAAAAGTAGTGGAATTGGAAGAAGAAGAAGAAAGAAGAAGAGATGGAACATGGAATAATGATACAGTGAATTGTCAACTCATAAACCTTACAAGGAACACCCGACATCTAAACAGTGTCATTGAACCCCGCAACGATCCAAGACGATACAATATCGTTAGCGATGACGAGGAATCTGAGACGACGACGCTCCAGTTGTTTCCTCTGAGCAGCATGAAGTACTGCAAATACGAGAGCGAGAATGAGAACGAGAGGGAGGAACGACAAGACGATCGGCTGGATTCGAACATGATCAGGAGCTCGACGTCCACATTTTCTCCCAGTTGTTTCAAGTTCTTTGAGTTTCTTCCTCTCAAAAACTGA 945 46.88 MWTLGHDDNGAQFCFSQPFHGGRKLRPLVPRPLPSLRLNAANLPSPYYHLANLLNDQSKRELLNNDDNGLSSPPVVVSSSRWNPTPEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAAEEHKYSETEKGYEIEQTKTNRPRPTPPPSNLCSNTTLSQECAKIQRTTKVVELEEEEERRRDGTWNNDTVNCQLINLTRNTRHLNSVIEPRNDPRRYNIVSDDEESETTTLQLFPLSSMKYCKYESENENEREERQDDRLDSNMIRSSTSTFSPSCFKFFEFLPLKN 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1528835 1532170 + CmoCh11G003160.1 Cmo11g00316 390935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00316 314 MobiDBLite consensus disorder prediction 272 292 - -
Cmo11g00316 314 MobiDBLite consensus disorder prediction 141 164 - -
Cmo11g00316 314 CDD homeodomain 81 141 IPR001356 GO:0003677
Cmo11g00316 314 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 54 314 - -
Cmo11g00316 314 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677
Cmo11g00316 314 MobiDBLite consensus disorder prediction 137 181 - -
Cmo11g00316 314 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 54 314 IPR044555 GO:0003700|GO:0099402
Cmo11g00316 314 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
Cmo11g00316 314 SMART HOX_1 77 144 IPR001356 GO:0003677
Cmo11g00316 314 MobiDBLite consensus disorder prediction 272 289 - -
Cmo11g00316 314 Pfam Homeodomain 79 139 IPR001356 GO:0003677
Cmo11g00316 314 Gene3D - 77 139 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00316 Cmo18g00054 CCT
Cmo11g00316 Cmo13g01029 CCT
Cmo11g00316 Cmo18g00054 ECH
Cmo11g00316 Cmo13g01029 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00169 Cmo-Chr5:728097 Cmo11g00316 Cmo-Chr11:1528835 1.88E-28 dispersed
Cmo07g00429 Cmo-Chr7:1970283 Cmo11g00316 Cmo-Chr11:1528835 6.61E-28 dispersed
Cmo11g00316 Cmo-Chr11:1528835 Cmo18g00054 Cmo-Chr18:346478 1.16E-58 dispersed
Cmo16g01322 Cmo-Chr16:9380247 Cmo11g00316 Cmo-Chr11:1528835 3.53E-15 dispersed
Cmo11g00316 Cmo-Chr11:1528835 Cmo13g01029 Cmo-Chr13:8676452 3.75E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10540 PF00046 Homeodomain 1.00E-19 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00316 - - csv:105434593 334.724