Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00319 ATGCCGGATACTCCATCTTCGCCAAAGAGCGGTGGTCGGTTGGTGTTAATGGAGAATCTGCTCGGACTTCTCCGTATTCGCGTCATTCGTGGTGTCAATCTTGCTGTTCGTGATGTTCGCAGCAGCGATCCTTATGTTGTCATCAAGATGGGAAAGCAAAAATTGAAGACACGGGTGATAAAGAAGGATGTCAATCCTGTATGGAATGAAGATCTAACACTTTCTGTCAGTGACCCGAAAATTCCCATTAAGCTGACTGTTTACGACCACGACAAATTTAGCAAGGATGATAAAATGGGATATGCTGAGTTTGATATCAAATCATTTATAGAAGCTCAAAAGATGAACTTGAAAAATCTTCCTAGTGGAACGACAATCTCACGAACGCTACCGGGCAGGCACAACTGTTTTGCTGAAGAGAGCTGCGTCATCTGGAAAGACGGTCAAGTTATCCAAGATATATACCTTAGACTCAAAAGGGTCGAATGCGGAGAAGTCGAAATTCAGCTGCAGTGGATTGATCTTCCAAACCCCAAAGGTTAA 543 43.46 MPDTPSSPKSGGRLVLMENLLGLLRIRVIRGVNLAVRDVRSSDPYVVIKMGKQKLKTRVIKKDVNPVWNEDLTLSVSDPKIPIKLTVYDHDKFSKDDKMGYAEFDIKSFIEAQKMNLKNLPSGTTISRTLPGRHNCFAEESCVIWKDGQVIQDIYLRLKRVECGEVEIQLQWIDLPNPKG 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1548827 1551657 - CmoCh11G003190.1 Cmo11g00319 390938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00319 180 CDD C2_ArfGAP 21 164 - -
Cmo11g00319 180 SMART C2_3c 23 118 IPR000008 -
Cmo11g00319 180 Pfam C2 domain 22 113 IPR000008 -
Cmo11g00319 180 Gene3D C2 domain 18 179 IPR035892 -
Cmo11g00319 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 11 179 - -
Cmo11g00319 180 ProSiteProfiles C2 domain profile. 5 119 IPR000008 -
Cmo11g00319 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 22 166 IPR035892 -
Cmo11g00319 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 11 179 IPR044562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00319 Cmo-Chr11:1548827 Cmo18g00057 Cmo-Chr18:373965 2.96E-88 dispersed
Cmo18g00872 Cmo-Chr18:10020555 Cmo11g00319 Cmo-Chr11:1548827 1.70E-37 dispersed
Cmo18g00573 Cmo-Chr18:5416529 Cmo11g00319 Cmo-Chr11:1548827 3.23E-39 transposed
Cmo10g00353 Cmo-Chr10:1600544 Cmo11g00319 Cmo-Chr11:1548827 7.96E-110 wgd
Cmo11g00319 Cmo-Chr11:1548827 Cmo13g01025 Cmo-Chr13:8651244 7.97E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00319 - - csv:101220972 303.138