Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00322 ATGTCCCCTACAAAATTCCTACACTTCGGCACTGCAATCTCCCGAGCAACATCCAGATCTCTATCGCCACTCCTCTTCCCCAGAAGATTCTTCATCAAGTGCAGCTCTTCTACTACGCTAGATTCCGCCGGCGACGGCGGCGGCGTTGATGCGCCTCAACCACACTCCAGCCTCATTCACCACCCCTGGCCTGAATGGATTTCCTTTGTCGACGGCCTGAAGACCAAAGGTTACTTGATCGAACCTCCTTCGGAAGATGCAAACGGAGATGGGAGCAGTAGTGATGCAGTTACGCCATCCGAGACTGATTACAGCGACATGAACGTGCTGAAGGATGCTTGCCTTAGCTTTGCGCGCGACCGCCACGATATTTTAGAGTCATTGTCCAGAGATGATATTCAAACGGTAATGAAGGATGGATGTCCCAATCTCTTCCGGAAAGTTGTCAATTCAGCTAAAAGGTTAAGGGCTTATGTGCATCTAGATGAAGGGGAGGTTTGTAGTACTTGCAACCTTCGAGGCTCCTGTGATAGAGCTTATGTTATTATGAAGGAAACAGAAGCTGCAAGAACTGTGGATGTAGCTAGAATATTGTTGGCCTATGCATTGGATCCACTTGTTTTGTCTGGAGGGGACAAAGCTTTGGGTAGAGAGCATGTCGAAGTCTCTATCAGGAAATTGCTTTCTGAGATATCTGAACTGAGTGAAGAACCCATTGAGGCAGCTGCAGCAGTGAAGGCTGATACAAAAACTCCATCAAGAAAAGAAACGCCTTCAAAACTTACAAATGATGCATTGTATAAAGATGTTGAGATGAAAAGAGGAGATTGGATGTGCTCAAAGTGCAATTTTTTGAATTTTTCAAGAAACAAAAGATGTTTAAAATGCAATGAAGAAGGTCCTAAAAGAGTTGGGGCAGATGATATAGAAATGAAGAGCGGAGATTGGATCTGCCCAGAGTGTAAATTCATGAACTTCTCAAGAAACATTCAGTGCTTAAAGTGCAAAAGCAAGAGGCCGAAGAAGATTAATAATGTTGATGAAATTGAAATGAAGAAGGGAGATTGGATCTGCCCGCAATGTGAATTCATGAACTTTGCGAGTAAGAAGGAATGCTTGCGATGCCGAGAACATCGTCCAAAGAGGGAGCTGAGTCCAGGAGAATGGGAATGCCCCTCATGTGACATTTTTAATTACAGACGGAACATGATGTGCCGCAACTGCAATTGTGAGCGCCCTACACAAGAAATAAGCGCGGAGTGCCAGGAACATCTATGGGAGTCACCCACGGAAAGGTGA 1299 45.19 MSPTKFLHFGTAISRATSRSLSPLLFPRRFFIKCSSSTTLDSAGDGGGVDAPQPHSSLIHHPWPEWISFVDGLKTKGYLIEPPSEDANGDGSSSDAVTPSETDYSDMNVLKDACLSFARDRHDILESLSRDDIQTVMKDGCPNLFRKVVNSAKRLRAYVHLDEGEVCSTCNLRGSCDRAYVIMKETEAARTVDVARILLAYALDPLVLSGGDKALGREHVEVSIRKLLSEISELSEEPIEAAAAVKADTKTPSRKETPSKLTNDALYKDVEMKRGDWMCSKCNFLNFSRNKRCLKCNEEGPKRVGADDIEMKSGDWICPECKFMNFSRNIQCLKCKSKRPKKINNVDEIEMKKGDWICPQCEFMNFASKKECLRCREHRPKRELSPGEWECPSCDIFNYRRNMMCRNCNCERPTQEISAECQEHLWESPTER 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1564019 1567985 + CmoCh11G003220.1 Cmo11g00322 390941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00322 432 ProSiteProfiles Zinc finger RanBP2 type profile. 312 341 IPR001876 -
Cmo11g00322 432 SMART zf_4 314 338 IPR001876 -
Cmo11g00322 432 SMART zf_4 275 299 IPR001876 -
Cmo11g00322 432 SMART zf_4 387 413 IPR001876 -
Cmo11g00322 432 SMART zf_4 354 378 IPR001876 -
Cmo11g00322 432 SUPERFAMILY Ran binding protein zinc finger-like 305 342 IPR036443 -
Cmo11g00322 432 SUPERFAMILY Ran binding protein zinc finger-like 269 300 IPR036443 -
Cmo11g00322 432 ProSiteProfiles Zinc finger RanBP2 type profile. 273 302 IPR001876 -
Cmo11g00322 432 ProSitePatterns Zinc finger RanBP2-type signature. 389 408 IPR001876 -
Cmo11g00322 432 ProSitePatterns Zinc finger RanBP2-type signature. 277 296 IPR001876 -
Cmo11g00322 432 PANTHER ZINC FINGER PROTEIN 53 303 - -
Cmo11g00322 432 PANTHER ZINC FINGER PROTEIN 298 342 - -
Cmo11g00322 432 PANTHER ZINC FINGER PROTEIN 340 426 - -
Cmo11g00322 432 ProSitePatterns Zinc finger RanBP2-type signature. 356 375 IPR001876 -
Cmo11g00322 432 Pfam Zn-finger in Ran binding protein and others 352 379 IPR001876 -
Cmo11g00322 432 Pfam Zn-finger in Ran binding protein and others 312 340 IPR001876 -
Cmo11g00322 432 Pfam Zn-finger in Ran binding protein and others 274 296 IPR001876 -
Cmo11g00322 432 SUPERFAMILY Ran binding protein zinc finger-like 349 381 IPR036443 -
Cmo11g00322 432 ProSiteProfiles Zinc finger RanBP2 type profile. 385 414 IPR001876 -
Cmo11g00322 432 MobiDBLite consensus disorder prediction 80 102 - -
Cmo11g00322 432 Gene3D - 383 417 - -
Cmo11g00322 432 Gene3D - 265 303 - -
Cmo11g00322 432 Gene3D - 304 342 - -
Cmo11g00322 432 Gene3D - 344 382 - -
Cmo11g00322 432 Coils Coil 217 237 - -
Cmo11g00322 432 MobiDBLite consensus disorder prediction 87 102 - -
Cmo11g00322 432 ProSitePatterns Zinc finger RanBP2-type signature. 316 335 IPR001876 -
Cmo11g00322 432 PANTHER ASPARAGINE-RICH PROTEIN 298 342 - -
Cmo11g00322 432 PANTHER ASPARAGINE-RICH PROTEIN 53 303 - -
Cmo11g00322 432 PANTHER ASPARAGINE-RICH PROTEIN 340 426 - -
Cmo11g00322 432 ProSiteProfiles Zinc finger RanBP2 type profile. 352 381 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00322 - - - cmax:111497775 712.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00358 Cmo11g00322 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00322 Cmo-Chr11:1564019 Cmo11g00565 Cmo-Chr11:2740246 1.36E-06 dispersed
Cmo05g01128 Cmo-Chr5:8991732 Cmo11g00322 Cmo-Chr11:1564019 1.43E-58 transposed
Cmo06g00060 Cmo-Chr6:371499 Cmo11g00322 Cmo-Chr11:1564019 1.57E-24 transposed
Cmo09g00653 Cmo-Chr9:3256928 Cmo11g00322 Cmo-Chr11:1564019 1.82E-09 transposed
Cmo15g01024 Cmo-Chr15:6041431 Cmo11g00322 Cmo-Chr11:1564019 1.54E-71 transposed
Cmo10g00358 Cmo-Chr10:1619315 Cmo11g00322 Cmo-Chr11:1564019 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00322 Cmo_Chr11 FPKM 6.392283 7.520061 0.460517 0.342809 20.329086 21.199173 22.035311 0.183962 0.128466 0.180919