Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00325 ATGGTTGCTGATTTCGCAAGATACGGGAGAAGGGTCAACCAGCCAATTGGCGCCGTAGGGATGGCTGTTTTTACACATGGAATCCCCAATTCCCGAATCTTCTGTGAAAGAGAGGGAACCTTGTTTTTAGGTTTTTCGGCTGCTCCAGTCTTGCCACAGAGGGCGAGAGTTTACGGACATTTTGCCAGAGAGAGAGGAAGTAGTGAAAGGTTGTCAAAAAAGGAACGTATTGATTTCCCAACGAAAGGATTCTTTGGCACAAAGAGAGTTGTTGTCACTGTCCCTAGGGACAGTAGCTCTTCAAACACAAGCAGCAGCGAGGATGATCCAACAAATCAATCCAAGCAAACACCTTTCGGTTACACAAGGAAGGATGTTCTATTAATTGGATTGGGTGTCACAGTTCTTGGATTTGGGTTGAAAAGTGGATTAGAGTTTGCTGGGTTTGATCCTATGCAAGCAGGTAACGTGGTTCAGCTTGTACTGGTTTTGGGTTTAACGCTTGCATGGATTTCCACATATATGTTTAGAGTTTCAAATAAGGATATGACATATGCCCAACAACTACGTGACTACGAAGACAAAGTCATGGAGAAACGCCTGGAGAGCCTTACCGAAGCAGAGCTCGTAGCATTGCTCGAACAAGTCGAGGAAGAGAAAAGCCAATCAGCGAGTGGCGAACAGACAAACCCTAATTCGGCCATTGAGATGGCAATTGTTACCGGAGATCGATATTTGGAGAAGTTGGTGAAGTTTGTGGAGGAACACGCCGATCCTCTGATTGAAGGAACTTCGGTGTTGAAGCTAAATCCAGCGGGATTGCACTATGTGCAGTCGAGGTTGGAGGCCTTACATGAACTCGAGAGTCTTTTAACCGGAGCTCCAGTTGACTACCTTCGCGCTTATGTCTCCGACCTTGGCGACCACCGCGCGCTTGAGCAGCTCCGACGAATTCTGAGACTGCTTACATCTCTGAAGGTCGTTTCGGTGCTTCCGCAGCCGTTGCGAGACCCGACGCCGCTGTCTCTGTTGCCGTTTGGAAGTCTGAAGGTTTTGGAGCTCAGAGGATGCGATTTGTCGACCTCGGCGGCGAGAGGATTGCTGGAGTTGAGGCAAACCTTGGAGAAGATCATTTGTCACAATTCTACTGATGCTCTGCGGCATGTGTTTGCAAGTAGGATTGTGGAGGTTAAGAACTCTGCACAATGGAGCCGATTGTCATTTGTTTCATGTGCGTGCAATGGCTTAGTTCTCATGGACGAGTCTTTGCAACTTCTACCTGCTGTTGAAACCCTTGATCTGAGCCGAAATAAGTTTGCAAAAGTGGACAATCTTCGCAAGTGTGTGAAACTGAAACATTTGGATCTTGGTTTTAATCATCTAAGGACAGTTGCCTCTTTTACTGAGGTCCCGTCGAATCTAATTAAACTTGTTTTGAGGAACAATGCTCTAACTACATTGCGTGGGATTGAGAATTTGAAGTCACTTGAAGGGCTTGACGTGTCCTACAATATAATTTCCAATTTTTCAGAGTTGGAGTTCCTTGTGGATATTACATCTTTACAGAATTTATGGCTAGAGGGAAATCCCTTATGTTGTGCTCGGTGGTACAGAGCACATGTGTTCAGCCTTTTCTCTTATCCGGATAACCTGAAGTTAGATGACAAGGGAATCTGCAAAAGAGAATATTGGAAGAGGAAAATTATCATTGCTAGCAGGCAAAAGCGACCTGCCAGTTTTGGATTTTATTCCCCTGCAAAAGATGGTGCGCAAGGAGAGGGAAGCATAAACAGGAAAAAGAAGACAATTTCTCGAATTGCTTCTATTCAGAGTGAGGAAGAGAGTACTTATTTTTGTTCTGACCAGGAGTCCGTATGCTGTGATAATGAGACTGAAAGCAGAGGGGAAGCAGCATTATCTGATAATGAAGTTGAAGCAGTTGATTTGATGAAGAAAATTGAATTTATTAAGAAAGAGCGTTCTGCACTTTGGCTGCGAGAGTTCGAGGACTGGGTGGATCGTGCTCCTCCAAATACTGTGAATGGCAATATCAACAGGGCTATTTTGCACCCTGGGAAAGAAAATTATTTGAAAAGTAGGAAAACTTCACATCATGTTGGTGAGAGTTCAAGATATAAATCAGAGTCTATTCAGGCATCGGGAGATGAAAGTAGTACAAATTTTGTGGAGTCAGATAGTTCCTTTGTAGAACCTAGTGGTTTGACTATCTCCCATTACTTTGGCCTGAATGGGACTCTGGGGAATGATGTCGAAGTGCCCTTATCTAGAACACAGAGATTGGATCATAAAAGTAGTCACCTTAGTTCTTCATTTGAAGGAATCAATAGTCCATCTACCCATGTGAAAAGCTTTTATCCTTCGTATAATAGGTTCCAGGGAGGTCAAGCAAAGGTTGAAGATGGTAGTATGTCACCATTGTATGCCATTGATAGTATATCTGAGTCTCACTCTTCCTCAGCGTTCCCTGGATCACCACCCCATTATCAAGAGGATATTCTTCACCGCCGACATAACTTCATGGAAGAGATTTTGCAATTATCTGCAGAGTCATATTCAGTTCCTTCCTCTGATAGCTATTCCAGCAGTAGTGAGGATGATATCTTTCCCTTTGAACCATTAATGCAAGAAGTTATTCAACCTACAGAGGATAACTCTATACGTGGAAGTGCTGAAGGTCAATTGTCATTAGATCATAGTAAAGGTGGTACTTCTAAACAGTGTCATGAACATCTGGTGGGAGAAAATGGCCTGTGCCATTTTGATTCATCAGTTGATCAAATGTCTAGCATGCAGAAGTCTGTTTTGCAAGGCTCCAGCATGCAGTTGCCTTGCAATGTTTTTCCTGCTGACGCTCATGCCTATGGAACTGATCATTCAATCCAATATGAGAACAGTAAGCTGAGGAACAGAGAAAGCAAAAGAAAAGTGAAAAAAAGAGTTGTTTCATTGTCAGGACATACTGTAGTTGGAAGGACAGACAAGCACAAAAGGACAAGTTGTGATTGGAGTGTTTCTGGAGCTGATATGGAAATTGAACTGGAAAATGATAAATTTATTGAAAACTATTTCAATTTAAATATTGCAGATTCTGGAGTTCATGAAACTTGTCGGCAGTATCTCAAATGCATTTGTATACTTGATTCTGAGCACGTCTACAGAAAAGTGGTTCTTTTACTTAGTAGTAGAAACAAGTTGTATGTACTTATTGTTCGAGCGGCTGGAGATGGTTCAGGAGCGATTCTTATTTTATCGGATTGTCACAATGTTGAAGATATTAAAGAGGTCTTTGTGGGCCTGGGGCTTCAGGTTGTGAGAGTTTGCATGGAGAGAAGCATCAAATATTTGTTTGTAACTGGATTCATTGAGAAATCGAGACAATTACTTTGTATGTTGCAAGTATCTGACATTGGGACACCTAGTGACAAGAGCTTCTTAAGAAGTTTGGAGCAGGTCCAGGTTGAATTGTTTGAAAAACAAATATGTGGAGGTGCAAAAGCTAACTTACTTCAATATTCTATGGTGCTATTTTGTTGCAGTGAGATTCAAGGAGAATTGTGGCGTCCTCGATCCTTATTTATTTTTGAAGGGCATTTAATTGTGTGCATCGAGGACTTAATGCAGTTAATGCAATTCGATTCTTTCTCCATGGAAGGACCGTTACCTCCATACTATGCACTCGATTCATGTTGCTTGATTTCCGACATACTTGAGATGGTTGTTGACGTGAAGGGGGCGTTGTGTGTGACTTTATCTTTAAAATTTGCATCATCAGAGTTCTCCTTGGTCCCCAAATCCGACGAGGAGGTCACTGCCATCAAGAAGGAGACGTCATCACTGTGCTCTACGAAATGGAAGATCAAATGGTTCCATGAAGAAAATCTACTTAATTTCATTGCACTAGCGAAGGCAATCCACCTAGGAAGTAAGGAGTCCCCCTTGCCTGTGAGATATTTATCATGA 3981 42.55 MVADFARYGRRVNQPIGAVGMAVFTHGIPNSRIFCEREGTLFLGFSAAPVLPQRARVYGHFARERGSSERLSKKERIDFPTKGFFGTKRVVVTVPRDSSSSNTSSSEDDPTNQSKQTPFGYTRKDVLLIGLGVTVLGFGLKSGLEFAGFDPMQAGNVVQLVLVLGLTLAWISTYMFRVSNKDMTYAQQLRDYEDKVMEKRLESLTEAELVALLEQVEEEKSQSASGEQTNPNSAIEMAIVTGDRYLEKLVKFVEEHADPLIEGTSVLKLNPAGLHYVQSRLEALHELESLLTGAPVDYLRAYVSDLGDHRALEQLRRILRLLTSLKVVSVLPQPLRDPTPLSLLPFGSLKVLELRGCDLSTSAARGLLELRQTLEKIICHNSTDALRHVFASRIVEVKNSAQWSRLSFVSCACNGLVLMDESLQLLPAVETLDLSRNKFAKVDNLRKCVKLKHLDLGFNHLRTVASFTEVPSNLIKLVLRNNALTTLRGIENLKSLEGLDVSYNIISNFSELEFLVDITSLQNLWLEGNPLCCARWYRAHVFSLFSYPDNLKLDDKGICKREYWKRKIIIASRQKRPASFGFYSPAKDGAQGEGSINRKKKTISRIASIQSEEESTYFCSDQESVCCDNETESRGEAALSDNEVEAVDLMKKIEFIKKERSALWLREFEDWVDRAPPNTVNGNINRAILHPGKENYLKSRKTSHHVGESSRYKSESIQASGDESSTNFVESDSSFVEPSGLTISHYFGLNGTLGNDVEVPLSRTQRLDHKSSHLSSSFEGINSPSTHVKSFYPSYNRFQGGQAKVEDGSMSPLYAIDSISESHSSSAFPGSPPHYQEDILHRRHNFMEEILQLSAESYSVPSSDSYSSSSEDDIFPFEPLMQEVIQPTEDNSIRGSAEGQLSLDHSKGGTSKQCHEHLVGENGLCHFDSSVDQMSSMQKSVLQGSSMQLPCNVFPADAHAYGTDHSIQYENSKLRNRESKRKVKKRVVSLSGHTVVGRTDKHKRTSCDWSVSGADMEIELENDKFIENYFNLNIADSGVHETCRQYLKCICILDSEHVYRKVVLLLSSRNKLYVLIVRAAGDGSGAILILSDCHNVEDIKEVFVGLGLQVVRVCMERSIKYLFVTGFIEKSRQLLCMLQVSDIGTPSDKSFLRSLEQVQVELFEKQICGGAKANLLQYSMVLFCCSEIQGELWRPRSLFIFEGHLIVCIEDLMQLMQFDSFSMEGPLPPYYALDSCCLISDILEMVVDVKGALCVTLSLKFASSEFSLVPKSDEEVTAIKKETSSLCSTKWKIKWFHEENLLNFIALAKAIHLGSKESPLPVRYLS 1326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1574165 1590170 + CmoCh11G003250.1 Cmo11g00325 390944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00325 1326 Pfam Protein of unknown function (DUF3007) 122 217 IPR021562 -
Cmo11g00325 1326 MobiDBLite consensus disorder prediction 712 731 - -
Cmo11g00325 1326 MobiDBLite consensus disorder prediction 95 118 - -
Cmo11g00325 1326 MobiDBLite consensus disorder prediction 699 731 - -
Cmo11g00325 1326 ProSiteProfiles Leucine-rich repeat profile. 473 494 IPR001611 GO:0005515
Cmo11g00325 1326 SMART LRR_sd22_2 426 447 - -
Cmo11g00325 1326 SMART LRR_sd22_2 471 492 - -
Cmo11g00325 1326 SMART LRR_sd22_2 448 469 - -
Cmo11g00325 1326 SMART LRR_sd22_2 493 514 - -
Cmo11g00325 1326 SUPERFAMILY Outer arm dynein light chain 1 401 550 - -
Cmo11g00325 1326 ProSiteProfiles Leucine-rich repeat profile. 450 471 IPR001611 GO:0005515
Cmo11g00325 1326 PANTHER NISCHARIN RELATED 238 1322 - -
Cmo11g00325 1326 ProSiteProfiles Leucine-rich repeat profile. 495 516 IPR001611 GO:0005515
Cmo11g00325 1326 Gene3D Ribonuclease Inhibitor 391 567 IPR032675 -
Cmo11g00325 1326 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 238 1322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00325 - - - bhj:120071716 1779.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01655 Cmo-Chr1:12532660 Cmo11g00325 Cmo-Chr11:1574165 1.26E-09 dispersed
Cmo11g00325 Cmo-Chr11:1574165 Cmo19g00981 Cmo-Chr19:8820687 1.88E-07 dispersed
Cmo10g00363 Cmo-Chr10:1647651 Cmo11g00325 Cmo-Chr11:1574165 4.71E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g131 . . . . . . . . . . . Cma11g00320 . Car11g00295 . . . . . . . . . . . . . . . . . Cone2ag0777 . . . . . . . . . . . . . . . . . Cmo11g00325 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010273 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00325 Cmo_Chr11 FPKM 9.887955 13.202911 6.53797 7.307671 10.5592 11.352479 10.750911 7.666386 6.470603 6.965957