Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00333 ATGGCAAGCCCATCTCCACCGCCGGCGACCTCCACCACCTTCACCATCCTTCTCATTTTGATATCCTTTGAGGTCTTCTCATCGAAGGCTGCTTCTACAGACGCAGAAGCGCTTCTCAAGTTCAAAGGGTCTCTGGAAATGAACAATGATGTGTTGGGAAATTGGTCCGCCGGGTCCTCCCCTTGCACCGGCGACAAGGCGAACTGGGTCGGGATTCTTTGCGAGAAGGGGAATGTCTGGGGATTGAAGCTTGAGAACATGGGGCTCAAGGGTCACATTGACGTTGAGTCTCTGGAAGGGGTGCCCCAATTAAGGTCAATCAGTCTTATGAAGAATGACTTTGATGGGTCTCTGCCGGACGTCAAGAGACTCGGGGCATTGAAATCCCTGTATTTGTCAGGAAACCACTTCTCAGGGGACATTCCTGGGGATAAATTTTCAGGCATGTTGTCTTTGAAGAAAGTTTATTTGGCTCAGAACCATCTGGAGGGGCAGATTCCTTGGTCCTTGGCTGAGTTGCCACGATTGTTGGAGCTGAGGCTTGAAGCGAACCACTTTTCTGGCCAAATTCCTAATTTTGCACAGAAGACATTGAAGGTCTTTAATGTCTCCGGCAATGAACAACTTCGTGGCTCAATCCCACGAGCTTTCAGCAACTTCGATCCATCCTCCTTTAAAGGCCTTCACTGTTTATGTGGAAAACCACTTGATAAGCCATGCACCACTTCAAAAATGCCATCAATTGCGAGCATCATAATGGTTTCAATAGCTGTGACAGCGGCTCTACTTGCCATCGGAGCCGGAATAGTCATCCTTAGCCGTCGAAACCAATCGTCTTCTAATGAAGAGAATCCAGCCCACAGCAAATCTCCAAATGCTGGTGTGTCAAGTCCAGCAATCGGGTTGAGGTCACCCGATCGAGGCTCCAGTCATGGAAGCGTGGCGGGTAAACGGGCAGCCGAGAGTGCTAAGTTGTCATTTGTAAGAGATGATACAGAGAGGTTTGATTTATCAGACTTGCTTAAAGCCAATGCAGAAATCCTAGGAAGTGGATGCTTTGGATCTTCCTACAAAGCAGCCTTGACCAATGGACCTGTGATGGTTGTGAAGAGATTCAAGCAAATGAACAATGTGGACAGAGAGGAATTCCAAGAACATATGAGGAGAATTGGAAGGTTGAAACACCCCAACTTACTTCCTCTCGTCGCCTACTACTACAAAAAGGAAGAAAAACTTCTCATTACAGACTATGTTGAGAAGGGTAGCTTGGCTGTTCAACTTCACGGGCACCAAGCCGTGGGACAACCAGCCATTGATTGGCCTTCAAGGTTGAAGATCATCAAGGGCGTTGCAAAGGGTCTTCGTCATCTCTATGCTGAACTTCCGAGTCTTATAACCCCACACGGCCATCTCAAGTCCTCAAATGTCCTTCTCAAGGCCAATTTTGAGCCCCTTCTTTCAGACTATGGCTTGATCCCGGTTGTGAACCAAGAACACGCCCAAGAGCTAATGGTGGCTTACAAATCTCCCGAGTACATTCAACTAGGTCGCATCACAAAAAAGACAGACGTGTGGAGCTTTGGGATGTTGATCTTTGAGATTCTAACTGGGAAATTCCCAGCCAACTTTCTGCGTCAGAGCAAGAGTGGCAGCGAGGAGGAAGATTTGGCAAGTTGGGTCAAATCTATTCCTGAAAAAGAATGGATCGGCCAAGTGCTTGATAAGGACATGGGGCCAACCAAGAACAGTGATGGTGAGATTACGAAGCTACTGAAGATTGCAATAGCATGTTGCGAGAACGACTTCGAGAAGAGAATGGATTTGCGAGAGGTTGTGGAGAAGATCGAGGAGTTGAAAGAAAAAGATGGGGATGAAGATTTCTATTCATCATACGCAAGTGAAGCTGATATTAGATCTTCAAGAGGGTTATCTGACGAACTCAATTTCGCCATATGA 1956 47.09 MASPSPPPATSTTFTILLILISFEVFSSKAASTDAEALLKFKGSLEMNNDVLGNWSAGSSPCTGDKANWVGILCEKGNVWGLKLENMGLKGHIDVESLEGVPQLRSISLMKNDFDGSLPDVKRLGALKSLYLSGNHFSGDIPGDKFSGMLSLKKVYLAQNHLEGQIPWSLAELPRLLELRLEANHFSGQIPNFAQKTLKVFNVSGNEQLRGSIPRAFSNFDPSSFKGLHCLCGKPLDKPCTTSKMPSIASIIMVSIAVTAALLAIGAGIVILSRRNQSSSNEENPAHSKSPNAGVSSPAIGLRSPDRGSSHGSVAGKRAAESAKLSFVRDDTERFDLSDLLKANAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHPNLLPLVAYYYKKEEKLLITDYVEKGSLAVQLHGHQAVGQPAIDWPSRLKIIKGVAKGLRHLYAELPSLITPHGHLKSSNVLLKANFEPLLSDYGLIPVVNQEHAQELMVAYKSPEYIQLGRITKKTDVWSFGMLIFEILTGKFPANFLRQSKSGSEEEDLASWVKSIPEKEWIGQVLDKDMGPTKNSDGEITKLLKIAIACCENDFEKRMDLREVVEKIEELKEKDGDEDFYSSYASEADIRSSRGLSDELNFAI 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1627955 1630698 + CmoCh11G003330.1 Cmo11g00333 390952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00333 651 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Cmo11g00333 651 SUPERFAMILY L domain-like 32 229 - -
Cmo11g00333 651 Gene3D Transferase(Phosphotransferase) domain 1 418 637 - -
Cmo11g00333 651 Pfam Leucine rich repeat 127 186 IPR001611 GO:0005515
Cmo11g00333 651 SUPERFAMILY Protein kinase-like (PK-like) 346 617 IPR011009 -
Cmo11g00333 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 629 - -
Cmo11g00333 651 Gene3D Ribonuclease Inhibitor 26 125 IPR032675 -
Cmo11g00333 651 Gene3D Ribonuclease Inhibitor 126 241 IPR032675 -
Cmo11g00333 651 ProSiteProfiles Protein kinase domain profile. 342 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00333 651 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 11 629 - -
Cmo11g00333 651 MobiDBLite consensus disorder prediction 279 317 - -
Cmo11g00333 651 Gene3D Phosphorylase Kinase; domain 1 309 417 - -
Cmo11g00333 651 Pfam Protein tyrosine and serine/threonine kinase 346 615 IPR001245 GO:0004672|GO:0006468
Cmo11g00333 651 MobiDBLite consensus disorder prediction 279 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00001 Cmo-Chr1:3106 Cmo11g00333 Cmo-Chr11:1627955 0 dispersed
Cmo09g00528 Cmo-Chr9:2481380 Cmo11g00333 Cmo-Chr11:1627955 0 dispersed
Cmo11g00333 Cmo-Chr11:1627955 Cmo14g01203 Cmo-Chr14:10250707 0 dispersed
Cmo10g00371 Cmo-Chr10:1693944 Cmo11g00333 Cmo-Chr11:1627955 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74649 PF07714 PK_Tyr_Ser-Thr 4.70E-32 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00333 - - csv:101213261 994.956