Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00343 ATGGGCACCCTTCCCGATTCCTTCTTATTCTCTCTGATTTTCCTCTTCACCGTCGTCTCTCCAGCCGCCGCCGCCCTCCCCGGCGATCCTTCACTAAACCTTTTGCTTCCTCACCCAATTTTGTATCGCTTCAAGGCCATACAGGAAACTGTCTTTGATGCTTCTCCATCTCCCCCACCGCCGCCGTTGCCCTCTCCTCCTCCACCGGAAGACAAACCCGTCTACTCTCCGTTCCGGCCTAGCATGGCGGTGGTTGTCGGCGTTCTCACTACCACTTTCTCTATCACGTTCCTTCTTCTTCTCTACGCTAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGGTACTCGAGATATCCCAATTCGGTGATAGGTGCTCCGAGCTTCACGACGAGGAAGAACTCCGGCATTGACCAGGCGGTAATTGAATCGCTGCCGATTTTTCGATTTGGGTCGTTGAGCGGTCAAAAGGAAGGCCTTGAATGCGCCGTTTGCCTCGACAAATTCGAGCAAACGGAGATTCTTAGACTCCTTCCGAAATGCAAACACGCGTTCCATGTCGAGTGTGTCGATACTTGGCTTGATGCCCACTCTACTTGCCCTCTCTGCCGTTACCGAGTCGACCCGGAGGACGTCTTATTAATCGAAGACGTCAATATATTTCTCTACAACCCGGCGCCGGCACCGCCTCCGCTGCCTCCGCCGCGGGATTCAAACTCCAAGGATGTAGTATTGAACTTAGAACAGGGGAGAAAAAGTGGTAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCATCGGTGGGTGAGAAGCGAACCGGTGAATCCAGTCGCCGAGATCCGGCATTGTTGAGACGATCCCTCGACAGCAAGAGCAGCGAAACGGTGGCCATCGGGTGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGACGAGAAAACTAATCAGAATCAGAGCAGATTCGAGCACCGGATCATAGTGTCGCCGAGGGCGCCGGTGGTGGTACAGGGGCAGCAGAGATGGAGCGATGTACATGCGTCGGATTTGCTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGGTTCTCGGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATCATGGGGAAGCATGCCGGAAAAGGGACCGGGTTGATGATGGCAGACGTGTAA 1200 54.42 MGTLPDSFLFSLIFLFTVVSPAAAALPGDPSLNLLLPHPILYRFKAIQETVFDASPSPPPPPLPSPPPPEDKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRYPNSVIGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLYNPAPAPPPLPPPRDSNSKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKSSETVAIGCFDRHRKDGLLLPDEKTNQNQSRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGIMGKHAGKGTGLMMADV 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1688346 1689545 + CmoCh11G003430.1 Cmo11g00343 390962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00343 399 PANTHER RING-H2 FINGER PROTEIN ATL43 54 376 - -
Cmo11g00343 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 211 IPR013083 -
Cmo11g00343 399 SUPERFAMILY RING/U-box 142 209 - -
Cmo11g00343 399 MobiDBLite consensus disorder prediction 265 287 - -
Cmo11g00343 399 MobiDBLite consensus disorder prediction 53 72 - -
Cmo11g00343 399 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Cmo11g00343 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 54 376 - -
Cmo11g00343 399 MobiDBLite consensus disorder prediction 249 288 - -
Cmo11g00343 399 MobiDBLite consensus disorder prediction 54 72 - -
Cmo11g00343 399 CDD RING-H2_PA-TM-RING 161 204 - -
Cmo11g00343 399 Pfam Ring finger domain 161 204 IPR001841 -
Cmo11g00343 399 SMART ring_2 162 203 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00343 Cmo-Chr11:1688346 Cmo11g00640 Cmo-Chr11:3078135 5.77E-51 dispersed
Cmo15g01393 Cmo-Chr15:9479006 Cmo11g00343 Cmo-Chr11:1688346 9.01E-14 dispersed
Cmo17g00851 Cmo-Chr17:7882608 Cmo11g00343 Cmo-Chr11:1688346 1.68E-06 dispersed
Cmo11g00343 Cmo-Chr11:1688346 Cmo05g00544 Cmo-Chr5:2629998 1.24E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00343 K19041 - csv:101203916 586.26