Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00345 ATGAAGAGCTCTTCATCTCTGCTACATTCTCCAGTTTTCTTCTTTTTCCTGGGGATGCTAGTTGTGCTGGTGATCTTGTTGATTCTCATATTGATTTTTAGGAAATTGCTCAAACCGAATACAGTGGTGAAGCTATTAAGACCAACAGGAACAACTCAAGCATCGGCAGATTTGTTAAGCGAAAATCTCCACTCAATAAGTTACTTTGACTTTCACACACTGAAAAAGGCAACAAAGAATTTTGATCCGGCAAATCTTCTAGGCCTGGGAGGATTTGGACCCGTCTATCTGGGAACGCTAGAAGATGGAAGATTGGTAGCAATTAAGAAACTTTCACTAAACAAATCCCAACAAGGAGAACCAGAGTTTCTATCAGAGGTCAGACTGATAACAAGCATCCAACACAAGAACCTGGTTCGCCTGCTCGGTTGTTGCTCAGATGGGCCTCAACGGCTACTCGTGTATGAATACATGGAGAACAAGAGTTTGGATCTCATAATATATGGGGTAAGCGATCAATTCCTCAACTGGAATACCAGATTGAAGATTATCAGAGGCATTGCCAAAGGGTTGCAGTATCTACATGAGGATTCCCATCTAAGAATTATTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGACAGATTTCAGCCAAAGATTGGAGATTTTGGGTTGGCCAGATTCTTCCCAGATGACCAAGCTTACCTAAGCACTACATTTGCTGGAACTCTAGGCTACACAGCACCAGAATATGCAATTAGGGGAGAACTGTCAGAAAAGGCAGATGTATACAGTTTTGGAGTTCTTGTACTTGAAATCATCAGTGGCAGAAAAAACACAAATCTTTCTCTACCAACAGAAATGCAGTATCTTCCAGAATATGCATGGAAACTATATGAGAGGTCTGCACTAATCGAGCTTGTGGATCCAAAGATGAAGGATGATGGATATGTGGAGAAGAATGTAGTACATGTAATTCAGGTTGCTTTGTTATGCCTTCAGCCTCATGGCGACCTGAGACCTGCAATGTCTGAGATTGTTGCCATGTTAACATACAAATTTGAAATCATTCAAACACCTTTGAAACCAGCCTTCTTGGAAAGAAGGCCTAAAAGGAACAGAGATCTCTCGTTGACTAATCATGCAGATACCATTCCTTCTCCATTACAGTGA 1179 41.22 MKSSSSLLHSPVFFFFLGMLVVLVILLILILIFRKLLKPNTVVKLLRPTGTTQASADLLSENLHSISYFDFHTLKKATKNFDPANLLGLGGFGPVYLGTLEDGRLVAIKKLSLNKSQQGEPEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENKSLDLIIYGVSDQFLNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDRFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTNLSLPTEMQYLPEYAWKLYERSALIELVDPKMKDDGYVEKNVVHVIQVALLCLQPHGDLRPAMSEIVAMLTYKFEIIQTPLKPAFLERRPKRNRDLSLTNHADTIPSPLQ 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1693577 1695474 - CmoCh11G003450.1 Cmo11g00345 390964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00345 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Cmo11g00345 392 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 60 365 - -
Cmo11g00345 392 Gene3D Transferase(Phosphotransferase) domain 1 158 361 - -
Cmo11g00345 392 CDD STKc_IRAK 87 353 - -
Cmo11g00345 392 Gene3D Phosphorylase Kinase; domain 1 52 157 - -
Cmo11g00345 392 SUPERFAMILY Protein kinase-like (PK-like) 60 353 IPR011009 -
Cmo11g00345 392 SMART serkin_6 81 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00345 392 PANTHER RECEPTOR-LIKE KINASE 60 365 - -
Cmo11g00345 392 ProSiteProfiles Protein kinase domain profile. 81 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00345 392 Pfam Protein kinase domain 85 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00345 Cmo-Chr11:1693577 Cmo19g01123 Cmo-Chr19:9513633 3.26E-104 dispersed
Cmo11g00345 Cmo-Chr11:1693577 Cmo04g00059 Cmo-Chr4:326522 2.46E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74650 PF00069 Pkinase 8.10E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00345 - - cmax:111497330 689.108