Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00348 ATGGGAGACCAAGACGACCTCTGCAACATCAGGCTCGGCCTTAGCCTCGGCTCTGGATTTGGGGAATACGTCCCCAAAAAGATGCAGAAAATCAACAGTAATCATAACAACCCTAAATCCTGCACTGACCTCTCCTTCACCCTGGTTCCGAAGCAAGAATTGGCCATTAATTCTTCAACCACAACCAACAGCCTCGGCTCCGAACGTGAAAGAGAGAGAAAAAAGCTTCGGCTTTCTAAAGAACAAGCCACTTTGCTCGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCTGCTCAGAAACAGGCACTTGCCCACCAATTAAACCTCAAAACACGACAAGTGGAAGTCTGGTTCCAAAACAGACGTGCAAGGACGAAATTGAAGCAAACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAGAGGCTGAACGAAGAGAATCGGAGGTTGAAGAAAGAGTTGCATGAATTAAGATCCATCAAACTCGGAGCTTCCCAGTTGTATATTCAGCTCCCCAAGGCGGCGACGCTCACAATTTGCCCCTCATGCGACAAGATCACCAGGACACCCGCCGCCAACGCCGCCGCCGAGCCCAACTCTCCGCCACTATAA 618 49.35 MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSCTDLSFTLVPKQELAINSSTTTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAAEPNSPPL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1702662 1703910 - CmoCh11G003480.1 Cmo11g00348 390967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00348 205 PANTHER - 37 190 - -
Cmo11g00348 205 Coils Coil 128 162 - -
Cmo11g00348 205 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Cmo11g00348 205 SMART HOX_1 71 133 IPR001356 GO:0003677
Cmo11g00348 205 SMART halz 129 172 IPR003106 GO:0006355|GO:0043565
Cmo11g00348 205 SUPERFAMILY Homeodomain-like 58 130 IPR009057 -
Cmo11g00348 205 Pfam Homeobox associated leucine zipper 129 161 IPR003106 GO:0006355|GO:0043565
Cmo11g00348 205 Pfam Homeodomain 73 127 IPR001356 GO:0003677
Cmo11g00348 205 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Cmo11g00348 205 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 37 190 - -
Cmo11g00348 205 CDD homeodomain 73 130 IPR001356 GO:0003677
Cmo11g00348 205 Gene3D - 77 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00348 Cmo-Chr11:1702662 Cmo17g00902 Cmo-Chr17:8159676 8.73E-56 dispersed
Cmo10g00385 Cmo-Chr10:1753130 Cmo11g00348 Cmo-Chr11:1702662 2.28E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10541 PF00046 Homeodomain 3.20E-16 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00348 K09338 - csv:101203427 236.498