Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00351 | ATGGCCGTCGACCTCGCAGCGTTTCCGGCCACCATTGACGACCAAACCGCCATCCAAGATGCCGCCTCCGCCAGTTTACAGAGCATGGAGAGTCTAATCCGTCTCTTATCCAAACAACAACCCACTCAAAAAATCGCCGATCTCGATTGCTCTCAAGTCACCGATTTCACCGTCTCCAAATTCAAGCGATTCATTTCTCTCCTCAACCGCACCGGCCACGCCCGGTTCCGTCGCGGTTCTTCCTCTGTTTCCGTTCTCAATTCTCTTGATCCACTTCCCAGTTCCTCCACTATTGACTTCCTTAAATCGCCCGATTCCAAGGCTCCGACTGAGTCCACTACGACGTCGTCTCTCATGTCCACGATCACCGGCGACGGCAGCGTTTCCAACGAAAAGCTTGGTCTGTCACTCTTCACGCCGCCACCGCCACCGCCGGCGGTTTCCTCCGGTAAACCGCCCCTGTCGGCGAAGAGGAAGTGCGATGATAGCTCCCGATTTGGTTGCAAGATCAATTCCAAGGAGTGTCACTGCGCGAAGCGAAGGAAATCGGGAGTGAAAAAGACCGTACGAGTTCCGGCGATCAGTTCTAAGATCGCCGAGATACCTTCCGACGAGTATTCTTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCGCCGTATCCGAGAGGTTATTACAGATGCAGCGCCGTCAAAGGATGTCCGGCGAGGAAAAAAGTTGAAAGAGCTCGCGATGATCCGGCGATGCTCGTCGTAACTTACGACGGAGATCACCGACACCCGCCGGCCACGGTGCCGAGAGCGGCGGCCGATGCCAGCGTGGGCTTCGTTTCCCAGACGTGTTGA | 846 | 55.56 | MAVDLAAFPATIDDQTAIQDAASASLQSMESLIRLLSKQQPTQKIADLDCSQVTDFTVSKFKRFISLLNRTGHARFRRGSSSVSVLNSLDPLPSSSTIDFLKSPDSKAPTESTTTSSLMSTITGDGSVSNEKLGLSLFTPPPPPPAVSSGKPPLSAKRKCDDSSRFGCKINSKECHCAKRRKSGVKKTVRVPAISSKIAEIPSDEYSWRKYGQKPIKGSPYPRGYYRCSAVKGCPARKKVERARDDPAMLVVTYDGDHRHPPATVPRAAADASVGFVSQTC | 281 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1720993 | 1722413 | - | CmoCh11G003510.1 | Cmo11g00351 | 390970 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00351 | 281 | Pfam | WRKY DNA -binding domain | 204 | 261 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g00351 | 281 | MobiDBLite | consensus disorder prediction | 97 | 122 | - | - | |
Cmo11g00351 | 281 | Pfam | Plant zinc cluster domain | 157 | 199 | IPR018872 | - | |
Cmo11g00351 | 281 | ProSiteProfiles | WRKY domain profile. | 197 | 263 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g00351 | 281 | Gene3D | WRKY domain | 188 | 263 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g00351 | 281 | SMART | WRKY_cls | 202 | 262 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g00351 | 281 | SUPERFAMILY | WRKY DNA-binding domain | 200 | 262 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g00351 | 281 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 11 | 89 | - | - | |
Cmo11g00351 | 281 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 108 | 264 | - | - | |
Cmo11g00351 | 281 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 11 | 89 | IPR044810 | GO:0003700 | |
Cmo11g00351 | 281 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 108 | 264 | IPR044810 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00394 | Cmo11g00351 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00351 | Cmo-Chr11:1720993 | Cmo20g00978 | Cmo-Chr20:5451258 | 9.92E-65 | dispersed | |
Cmo10g00394 | Cmo-Chr10:1782511 | Cmo11g00351 | Cmo-Chr11:1720993 | 1.56E-115 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10542 | PF03106 | WRKY | 1.00E-25 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00351 | - | - | mcha:111006845 | 388.267 |