Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00351 ATGGCCGTCGACCTCGCAGCGTTTCCGGCCACCATTGACGACCAAACCGCCATCCAAGATGCCGCCTCCGCCAGTTTACAGAGCATGGAGAGTCTAATCCGTCTCTTATCCAAACAACAACCCACTCAAAAAATCGCCGATCTCGATTGCTCTCAAGTCACCGATTTCACCGTCTCCAAATTCAAGCGATTCATTTCTCTCCTCAACCGCACCGGCCACGCCCGGTTCCGTCGCGGTTCTTCCTCTGTTTCCGTTCTCAATTCTCTTGATCCACTTCCCAGTTCCTCCACTATTGACTTCCTTAAATCGCCCGATTCCAAGGCTCCGACTGAGTCCACTACGACGTCGTCTCTCATGTCCACGATCACCGGCGACGGCAGCGTTTCCAACGAAAAGCTTGGTCTGTCACTCTTCACGCCGCCACCGCCACCGCCGGCGGTTTCCTCCGGTAAACCGCCCCTGTCGGCGAAGAGGAAGTGCGATGATAGCTCCCGATTTGGTTGCAAGATCAATTCCAAGGAGTGTCACTGCGCGAAGCGAAGGAAATCGGGAGTGAAAAAGACCGTACGAGTTCCGGCGATCAGTTCTAAGATCGCCGAGATACCTTCCGACGAGTATTCTTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCGCCGTATCCGAGAGGTTATTACAGATGCAGCGCCGTCAAAGGATGTCCGGCGAGGAAAAAAGTTGAAAGAGCTCGCGATGATCCGGCGATGCTCGTCGTAACTTACGACGGAGATCACCGACACCCGCCGGCCACGGTGCCGAGAGCGGCGGCCGATGCCAGCGTGGGCTTCGTTTCCCAGACGTGTTGA 846 55.56 MAVDLAAFPATIDDQTAIQDAASASLQSMESLIRLLSKQQPTQKIADLDCSQVTDFTVSKFKRFISLLNRTGHARFRRGSSSVSVLNSLDPLPSSSTIDFLKSPDSKAPTESTTTSSLMSTITGDGSVSNEKLGLSLFTPPPPPPAVSSGKPPLSAKRKCDDSSRFGCKINSKECHCAKRRKSGVKKTVRVPAISSKIAEIPSDEYSWRKYGQKPIKGSPYPRGYYRCSAVKGCPARKKVERARDDPAMLVVTYDGDHRHPPATVPRAAADASVGFVSQTC 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1720993 1722413 - CmoCh11G003510.1 Cmo11g00351 390970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00351 281 Pfam WRKY DNA -binding domain 204 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g00351 281 MobiDBLite consensus disorder prediction 97 122 - -
Cmo11g00351 281 Pfam Plant zinc cluster domain 157 199 IPR018872 -
Cmo11g00351 281 ProSiteProfiles WRKY domain profile. 197 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g00351 281 Gene3D WRKY domain 188 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g00351 281 SMART WRKY_cls 202 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g00351 281 SUPERFAMILY WRKY DNA-binding domain 200 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g00351 281 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 11 89 - -
Cmo11g00351 281 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 108 264 - -
Cmo11g00351 281 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 89 IPR044810 GO:0003700
Cmo11g00351 281 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 108 264 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00394 Cmo11g00351 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00351 Cmo-Chr11:1720993 Cmo20g00978 Cmo-Chr20:5451258 9.92E-65 dispersed
Cmo10g00394 Cmo-Chr10:1782511 Cmo11g00351 Cmo-Chr11:1720993 1.56E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10542 PF03106 WRKY 1.00E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00351 - - mcha:111006845 388.267