Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00361 ATGAATTACTTGGAGAATGGCGTGTTCATGCCCGAAGATCTCGGCAGTTGGGGACTTGACGATCTGGTTCCCAGCTACTATGATTCCAGTTCGCCGGAGGGAGTTCTATCGCCGTCGGCGGCTTCGAAGAACATAGTATCGGAGAGGAATAGGAGGAGGAAGCTTAATGATAGGCTTTTTGCACTTCGAGCGGTGGTTCCAAATATTAGTAAGATGGATAAGGCTTCCATTATTAAAGATGCAATCGATCACATCCAGAAGTTGCGTGAACAAGAGAGGAGGATTGAAACTGAAATTTATGAGCTCGAATCGGGAAAGTCAAAGAAGAAGATAACGCGGTATGAGTTTGAGCAGGAGGTGCCATTGTTGCATACACCAAAGAGGAATAAAACAGAGCAATTCAGCTATTACGATTCTTCGGCTACAAGATTTTCCCCCATTGAAGTGCTGGATTTAAGTGTAACGTATATGGGGGAAAGAACAATCGTGGTGAGCTTAACGTGTTGCAAAAGAGCAGATTCAATGGTTAAACTATGTAAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTGTTCATCGAGGCTGGACAAGAGGAGAGAGATCTCTTGAAGATTAAAATAGAAACAGCCCTTGCAGGTCTTAATGATCCCCAGAGCCCTGTGAGTATCTAA 714 43.56 MNYLENGVFMPEDLGSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLNDRLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELESGKSKKKITRYEFEQEVPLLHTPKRNKTEQFSYYDSSATRFSPIEVLDLSVTYMGERTIVVSLTCCKRADSMVKLCKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKIETALAGLNDPQSPVSI 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1780118 1783310 + CmoCh11G003610.1 Cmo11g00361 390980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00361 237 Pfam Helix-loop-helix DNA-binding domain 46 88 IPR011598 GO:0046983
Cmo11g00361 237 PANTHER TRANSCRIPTION FACTOR BHLH35 8 231 - -
Cmo11g00361 237 Coils Coil 78 105 - -
Cmo11g00361 237 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 231 - -
Cmo11g00361 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 103 IPR036638 GO:0046983
Cmo11g00361 237 SMART finulus 45 94 IPR011598 GO:0046983
Cmo11g00361 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Cmo11g00361 237 Gene3D - 37 105 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00756 Cmo11g00361 CCT
Cmo11g00361 Cmo12g00920 CCT
Cmo10g00402 Cmo11g00361 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00361 Cmo-Chr11:1780118 Cmo20g00557 Cmo-Chr20:2692440 1.18E-20 dispersed
Cmo10g00402 Cmo-Chr10:1819981 Cmo11g00361 Cmo-Chr11:1780118 9.74E-109 wgd
Cmo11g00361 Cmo-Chr11:1780118 Cmo12g00920 Cmo-Chr12:8471988 6.81E-65 wgd
Cmo11g00361 Cmo-Chr11:1780118 Cmo05g00756 Cmo-Chr5:4037644 3.50E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10543 PF00010 HLH 2.90E-10 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00361 - - cmo:103494233 334.724