Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00361 | ATGAATTACTTGGAGAATGGCGTGTTCATGCCCGAAGATCTCGGCAGTTGGGGACTTGACGATCTGGTTCCCAGCTACTATGATTCCAGTTCGCCGGAGGGAGTTCTATCGCCGTCGGCGGCTTCGAAGAACATAGTATCGGAGAGGAATAGGAGGAGGAAGCTTAATGATAGGCTTTTTGCACTTCGAGCGGTGGTTCCAAATATTAGTAAGATGGATAAGGCTTCCATTATTAAAGATGCAATCGATCACATCCAGAAGTTGCGTGAACAAGAGAGGAGGATTGAAACTGAAATTTATGAGCTCGAATCGGGAAAGTCAAAGAAGAAGATAACGCGGTATGAGTTTGAGCAGGAGGTGCCATTGTTGCATACACCAAAGAGGAATAAAACAGAGCAATTCAGCTATTACGATTCTTCGGCTACAAGATTTTCCCCCATTGAAGTGCTGGATTTAAGTGTAACGTATATGGGGGAAAGAACAATCGTGGTGAGCTTAACGTGTTGCAAAAGAGCAGATTCAATGGTTAAACTATGTAAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTGTTCATCGAGGCTGGACAAGAGGAGAGAGATCTCTTGAAGATTAAAATAGAAACAGCCCTTGCAGGTCTTAATGATCCCCAGAGCCCTGTGAGTATCTAA | 714 | 43.56 | MNYLENGVFMPEDLGSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLNDRLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELESGKSKKKITRYEFEQEVPLLHTPKRNKTEQFSYYDSSATRFSPIEVLDLSVTYMGERTIVVSLTCCKRADSMVKLCKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKIETALAGLNDPQSPVSI | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1780118 | 1783310 | + | CmoCh11G003610.1 | Cmo11g00361 | 390980 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00361 | 237 | Pfam | Helix-loop-helix DNA-binding domain | 46 | 88 | IPR011598 | GO:0046983 | |
Cmo11g00361 | 237 | PANTHER | TRANSCRIPTION FACTOR BHLH35 | 8 | 231 | - | - | |
Cmo11g00361 | 237 | Coils | Coil | 78 | 105 | - | - | |
Cmo11g00361 | 237 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 8 | 231 | - | - | |
Cmo11g00361 | 237 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 40 | 103 | IPR036638 | GO:0046983 | |
Cmo11g00361 | 237 | SMART | finulus | 45 | 94 | IPR011598 | GO:0046983 | |
Cmo11g00361 | 237 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 39 | 88 | IPR011598 | GO:0046983 | |
Cmo11g00361 | 237 | Gene3D | - | 37 | 105 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00756 | Cmo11g00361 | CCT | |
Cmo11g00361 | Cmo12g00920 | CCT | |
Cmo10g00402 | Cmo11g00361 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00361 | Cmo-Chr11:1780118 | Cmo20g00557 | Cmo-Chr20:2692440 | 1.18E-20 | dispersed | |
Cmo10g00402 | Cmo-Chr10:1819981 | Cmo11g00361 | Cmo-Chr11:1780118 | 9.74E-109 | wgd | |
Cmo11g00361 | Cmo-Chr11:1780118 | Cmo12g00920 | Cmo-Chr12:8471988 | 6.81E-65 | wgd | |
Cmo11g00361 | Cmo-Chr11:1780118 | Cmo05g00756 | Cmo-Chr5:4037644 | 3.50E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10543 | PF00010 | HLH | 2.90E-10 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00361 | - | - | cmo:103494233 | 334.724 |