Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00369 ATGGCCGGAAAACTCAGTCTCGAGGAAATCAAGAACGAAACTGTTGACCTGGAGAAAATCCCGATCGAGGAAGTATTTGAGCTACTGAAATGTGGCCCCGAAGGTCTGTCAACTCCGGAGGGGGAAAACAGGCTCCAGATATTCGGTCCCAACAAATTAGAAGAGAAAAAGGAAAGCAAATTTCTGAAGTTCTTGGGGTTCATGTGGAATCCCTTGTCTTGGGTTATGGAAGCCGCAGCTTTGATGGCTATTGCTTTGGCTAATGGTGATGGACAGCCTCCAGATTGGGAAGACTTTGTGGGTATTATATGTTTGCTGGTCATCAACTCCACTATCAGTTTCATTGAAGAAAATAACGCTGGGAATGCTGCTGCTGCTCTCATGGCTGGCCTTGCCCCTAAAACTAAGGTACTGAGAGATGGGAAATGGAGCGAGCAGGATGCTGCAATTTTGGTTCCAGGAGATATCATTAGTGTAAAGTTGGGGGATATCATCCCAGCTGATGCTCGTCTTCTGGAGGGCGATCCTTTGAAAGTTGATCAATCTGCATTGACTGGAGAATCACTTCCTGTTACCAAGAATCCAGGGGATGGAATCTTCTCTGGTTCAACTTGTAAACAAGGAGAAATCGAAGCTGTTGTTATTGCCACTGGTGTTCATACCTTCTTTGGAAAAGCAGCACATCTTGTAGACAGCACCCACCAAGTTGGCCATTTCCAAAAGGTGCTCACAGCAATTGGGAATTTCTGTATTTGTTCCATTGCTTTAGGAATGCTGGTTGAGATCATTGTCATGTACCCAATTCAACACCGAAGTTACCGCGACGGTATCGACAATCTGCTCGTTCTCTTGATCGGAGGAATACCGATTGCCATGCCAACAGTGTTGTCAGTGACAATGGCTATTGGATCTCATAAGCTGTCCCAACAAGGCGCTATCACTAAGCGTATGACTGCTATTGAAGAGATGGCTGGTATGGATGTCCTGTGCAGTGATAAAACAGGAACATTGACTCTAAACAAGCTTAGTGTTGATGTCAACTTGGTTGAGGTTTTTGCTAATGGTGTGGATAAACAGCATGTGATATTGCTTGCTGCTAGAGCTTCTCGAACTGAAAATCAAGATGCTATTGATGCTGCTATTGTGGGAATGCTAGCTGATCCTAAGGAGGCACGAGCAGGCATAAAAGAAGTGCATTTCTTCCCTTTCAATCCTGTGGATAAGAGAACTGCATTAACTTACATTGATTCCAATGATAATTGGCATCGAGCAAGCAAAGGTGCTCCAGAACAGATCTTGACGCTTTGCAACTGCAAGGCCGATGTTAAGAAGGAGGCTCATGCTGTTATCGACAAATTTGCGGAACGTGGTCTTCGCTCGTTGGCTGTTGCGAGACAGGAAGTACCTGAGAAAAGAAAAGAAAGTCCTGGAAGTGCATGGCAGTTCGTTGGTTTATTGCCTCTATTTGATCCTCCAAGGCATGACAGTGGAGAAACCATCAAAAGAGCTCTCCATTTAGGTGTGAATGTCAAGATGATTACTGGTGATCAGCTCGCCATCGCCAAAGAGACGGGTCGACGACTCGGAATGGGGACGAACATGTACCCATCTGCATCCTTACTTGGTCAACACAAGGATGAAAGCATTGCAGGTCTTCCTATAGAAGAGTTAATTGAAAAGGCAGATGGATTTGCTGGAGTTTTTCCTGAGCACAAGTACGAGATCGTGAGGAAGTTGCAAGAGAGGAAACATATTTGTGGAATGACCGGAGACGGCGTAAATGACGCTCCGGCACTGAAGAAGGCTGACATTGGAATAGCAGTTGCTGATGCTACTGATGCTGCTAGAAGTGCTTCTGATATAGTCCTTACAGAGCCTGGCTTGAGTGTTATCATCAGTGCTGTTCTTACAAGTAGAGCTATCTTCCAAAGAATGAAGAATTATACGATTTATGCAGTTTCGATCACTATACGTATCGTGTTTACGAACTTTTTGCATTTGATTGCCAACAAACAGTTCGGTTTCATGCTTATTGCCCTCATATGGAAGTTCGACTTCTCTCCTTTCATGGTTTTGATCATTGCCATTCTAAATGATGGCACAATCATGACCATCTCAAAGGATAGAGTGAAGCCATCTCCATTACCTGATAGCTGGAAATTGAGAGAGATATTTGCTACCGGCGTTATGCTTGGAGGTTACTTGGCTTTGATGACTGTCATATTCTTCTGGATAATGAGAGAAACAGACTACTTCCCAGAGAAATTTGGTGTAAGATCTATAAAGGACAGTCCTAAAGAAATGATGGCTGCTCTTTACCTACAAGTGAGCATTGTCAGCCAGGCTTTGATCTTTGTGACTCGATCGCGAAGCTGGTCGTACTCCGAACGCCCTGGCTTGCTACTCATGGCTGCTTTCATGGTTGCACAACTGGTTGCAACGCTGATAGCAGTATATGCAAATTGGGGATTTGCAAAGATCAAGGGAGTTGGATGGGGATGGGCTGGCGTAGTCTGGCTTTACAGTATTATTTTCTACATTCCATTAGACTTCATCAAGTTTGCTATTCGATATGCCTTAAGTGGCAAGGCTTGGCTTAACATGCTAGATAACAAGACCGCCTTTACGACGAAGAAAAACTATGGAATGGCCGAAAGAGAAGCTCAATGGGCTGCCACTCAAAGGACCTTACATGGCCTCCAACCAGCCCCAGAAAGAACCAGCCTGTTCATTGAAAAGAATAGCTACAGAGAGCTGTCCGAGATCGCCGAGCAGGCCAAGAGACGAGCCGAGATTGCTAGGCTTAGGGAGCTCAACACTCTGAAGGGTCATGTTGAATCAGTGGTGAAACTGAAAGGGCTGGATATTGATACAATCCAACAGCATTATACTGTGTAG 2898 44.82 MAGKLSLEEIKNETVDLEKIPIEEVFELLKCGPEGLSTPEGENRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAALMAIALANGDGQPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDIISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDGIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTHQVGHFQKVLTAIGNFCICSIALGMLVEIIVMYPIQHRSYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDVNLVEVFANGVDKQHVILLAARASRTENQDAIDAAIVGMLADPKEARAGIKEVHFFPFNPVDKRTALTYIDSNDNWHRASKGAPEQILTLCNCKADVKKEAHAVIDKFAERGLRSLAVARQEVPEKRKESPGSAWQFVGLLPLFDPPRHDSGETIKRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQHKDESIAGLPIEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFTNFLHLIANKQFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVMLGGYLALMTVIFFWIMRETDYFPEKFGVRSIKDSPKEMMAALYLQVSIVSQALIFVTRSRSWSYSERPGLLLMAAFMVAQLVATLIAVYANWGFAKIKGVGWGWAGVVWLYSIIFYIPLDFIKFAIRYALSGKAWLNMLDNKTAFTTKKNYGMAEREAQWAATQRTLHGLQPAPERTSLFIEKNSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1826124 1834438 + CmoCh11G003690.1 Cmo11g00369 390988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00369 965 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Cmo11g00369 965 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 102 345 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo11g00369 965 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 564 670 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo11g00369 965 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Cmo11g00369 965 Gene3D - 327 626 IPR023214 -
Cmo11g00369 965 PANTHER CALCIUM-TRANSPORTING ATPASE 4 945 - -
Cmo11g00369 965 SFLD p-type atpase 312 640 IPR044492 -
Cmo11g00369 965 PANTHER PLASMA MEMBRANE ATPASE 4 945 - -
Cmo11g00369 965 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 860 IPR023298 -
Cmo11g00369 965 Pfam E1-E2 ATPase 132 309 - -
Cmo11g00369 965 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Cmo11g00369 965 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Cmo11g00369 965 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Cmo11g00369 965 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Cmo11g00369 965 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Cmo11g00369 965 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Cmo11g00369 965 CDD P-type_ATPase_H 35 854 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo11g00369 965 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Cmo11g00369 965 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Cmo11g00369 965 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 35 819 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo11g00369 965 Gene3D - 133 217 - -
Cmo11g00369 965 Gene3D - 95 828 - -
Cmo11g00369 965 Coils Coil 916 936 - -
Cmo11g00369 965 SUPERFAMILY HAD-like 326 636 IPR036412 -
Cmo11g00369 965 Gene3D - 914 965 - -
Cmo11g00369 965 PRINTS H+-transporting ATPase (proton pump) signature 773 794 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo11g00369 965 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo11g00369 965 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo11g00369 965 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo11g00369 965 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo11g00369 965 SFLD C1.7: P-type atpase like 312 640 - -
Cmo11g00369 965 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Cmo11g00369 965 Gene3D - 342 489 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00369 Cmo-Chr11:1826124 Cmo12g00243 Cmo-Chr12:1590880 0 dispersed
Cmo11g00369 Cmo-Chr11:1826124 Cmo12g00899 Cmo-Chr12:8278770 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00369 K01535 - csv:101221783 1727.22