Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00383 ATGCCTTCCGATTCTTCCTCTGAAGCCTGGATGATCTCTTTGACAATCAGGTCTGAGTTCTCCGGTTCTACTTATTCTTTCCCTACTCCTGTCGGAGCCGCTCTTGATCCATCAAAATGCAGTAAGACGAGCATGGAGGAGAAAAGAAATTTAGTCTATGAAATATCAGATCAGCCACATGCTTCTGAACTGCTTCAGTCCTGGAGTCGTCAAGAGATTCTAGAGATCCTGTGTGCAGAGATGGGAAAAGAGAGAAAATATACGGGATTAACAAAACTGAAAATAGTCGAGAACCTTCTGAAGATTGTTAGTGAAAAGAAATCAGGGTCAACTGAGAATGTAGCAGACCTTGACCAGCAATCTTCTTCACCCTATCTTTCTCCAAAGATTACCAAAAAGCAAAGAAAAATTGATCAGCCATCACGACTACCAGTTCCGGAAAACAATATTCCTATCAGTAGCATTAGGAGTGACTCAAATATTGCAGTTTACTGCAGAAATTCAGCATGCAAGGCTACCTTAAATGAAGATGATAAATTTTGCAAGAGGTGTTCATGCTGCATCTGCTATCAATATGATGATAATAAGGATCCTAGTCTATGGTTAAGTTGCAGCTCTGACCCACCATTTCAAGGCACTTCATGTGGTTTGTCATGCCATCTTGAATGTGCATTGAAGCATGAAAAATCTGGAATTTCTAAAGGACAGCAGGTTGGAATTGAAGGGACTTTCTATTGTCTATCATGTGGAAAAGTCAACGACTTGCTTGGGAGTTGGAGAAAACAATTGATGAAGGCAAAGGAAACCCGAAGGGTGGATATACTCTGTTACCGCATCTCTTTAGCCAAAAAGATTTTGAGTGAAGGTGAAAAGTATCAAGATGTTTGTCGGATCGTGGATGAGGCTGTGAAGAAACTTGAAGCTGAAGTGGGTCCTTTGACTGGTGTACCGGTTGGTACGGGCAGAGGCATAGTGAACAGGCTTTTTTCAGGACCAGAGGTTCAGAAACTCTGCACGTTAGCCATTGATACACTGGACTCCTTGCTCTCCAAGATCTTGCATCAATCGCCCATTTCCATTATACAAGACACAAATTTGGTAGCTACAAACTTATTAAGGTTCGAAGATGTTGATGCAACATACCTTACAGTGGTTATGGGTACCGAAGACGTTTCTTCTGGAGAAACTGTTGGTTACAGGCTATGGCATCGAAAGGCATGTGATATAGATTACCCTATAGAGCCAACTTGCATCTTGTCTCAACCCAATTTGAGGTTTGTCGTCCGAGGACTGACCCCATCTTCAGAATATTATTTCAAAGCCATTTCCTTTAATGGGACAGGAGATTTGGGGATGTGTGAAGTTCAGATCTCAACTGCTAGTGCTCGGGAGGATCACCCAGGATGCTTGGTGATTGAAAGAAGTCAGAGTTCGGTTACCAACGTTAGTGAGCTCTCTAATCCTTCTTCAGTAGAAGATGAAACAAACAATGTAATGCCTTGTAGCGACCAGACTGATAGTCAAACAGAGAACTATCTTTCTTATTGCAAAGATCCTAACAAGATTATCACTGCTAACCTGTCTAAAGATGCAATAAACTGCACTGATGTCGGTGGAGGAGAAACAGCAAAAGATTCTGTTTCTTTGTTGGATGAGAAACATGTTACAAAGAAAAGTGGCATGCTGCCTGATCCTAATGTTTCAAAACTTGAAGACAAACATTCCTCTGAGGTTCATATCATTGAAGATACAAGCGTAAATAACGGGTCAAATTCTGCCGTTCAAGAAGGAACTAAATGCCCACCATTTGTTAACAGCTCTGGGGCTGGATTGCCAGCTACTCCTTGCAAGATGGAAATACTTAAGGATGTTCTTGGAAGGAGTGGACGATCGAAGTCCAGTGCCAAGGATCGAGAAAACGGGTCTGGGGGAGACAAACTCCGACATGGCAGCAAATCTAAGAAGAGAAGTGCAGAGATTCGAGATGCTGATTGTACGGCAAATGGTATTTCAGATAAGGATTTTGAGTATTATGTAAAATTGATTAGATGGCTAGAATGCGAGGGACACATAGATAAGAACTTCAGACAAAAATTCTTAACCTGGTACAGCTTGAGTGCCACAGCCCAAGAAGTTAGGATTGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCTCTTGCAGAGCAACTTGTGGACACCTTTTCAGAATGCATTTCAAGCAAGAAAACATGTGCTGTGCCGGCTGGATTCTGCATGAAGCTTTGGCATTGA 2280 41.97 MPSDSSSEAWMISLTIRSEFSGSTYSFPTPVGAALDPSKCSKTSMEEKRNLVYEISDQPHASELLQSWSRQEILEILCAEMGKERKYTGLTKLKIVENLLKIVSEKKSGSTENVADLDQQSSSPYLSPKITKKQRKIDQPSRLPVPENNIPISSIRSDSNIAVYCRNSACKATLNEDDKFCKRCSCCICYQYDDNKDPSLWLSCSSDPPFQGTSCGLSCHLECALKHEKSGISKGQQVGIEGTFYCLSCGKVNDLLGSWRKQLMKAKETRRVDILCYRISLAKKILSEGEKYQDVCRIVDEAVKKLEAEVGPLTGVPVGTGRGIVNRLFSGPEVQKLCTLAIDTLDSLLSKILHQSPISIIQDTNLVATNLLRFEDVDATYLTVVMGTEDVSSGETVGYRLWHRKACDIDYPIEPTCILSQPNLRFVVRGLTPSSEYYFKAISFNGTGDLGMCEVQISTASAREDHPGCLVIERSQSSVTNVSELSNPSSVEDETNNVMPCSDQTDSQTENYLSYCKDPNKIITANLSKDAINCTDVGGGETAKDSVSLLDEKHVTKKSGMLPDPNVSKLEDKHSSEVHIIEDTSVNNGSNSAVQEGTKCPPFVNSSGAGLPATPCKMEILKDVLGRSGRSKSSAKDRENGSGGDKLRHGSKSKKRSAEIRDADCTANGISDKDFEYYVKLIRWLECEGHIDKNFRQKFLTWYSLSATAQEVRIVKAFVDNFIEDPSALAEQLVDTFSECISSKKTCAVPAGFCMKLWH 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1911728 1915566 - CmoCh11G003830.1 Cmo11g00383 391002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00383 759 MobiDBLite consensus disorder prediction 485 504 - -
Cmo11g00383 759 MobiDBLite consensus disorder prediction 627 648 - -
Cmo11g00383 759 PANTHER VIN3-LIKE PROTEIN 2-RELATED 32 759 - -
Cmo11g00383 759 Pfam PHD - plant homeodomain finger protein 165 283 IPR032881 -
Cmo11g00383 759 ProSiteProfiles Fibronectin type-III domain profile. 367 465 IPR003961 GO:0005515
Cmo11g00383 759 MobiDBLite consensus disorder prediction 627 655 - -
Cmo11g00383 759 CDD PHD_VIN3_plant 185 249 - -
Cmo11g00383 759 MobiDBLite consensus disorder prediction 111 129 - -
Cmo11g00383 759 SUPERFAMILY Fibronectin type III 373 448 IPR036116 GO:0005515
Cmo11g00383 759 MobiDBLite consensus disorder prediction 111 144 - -
Cmo11g00383 759 PANTHER VIN3-LIKE PROTEIN 2-RELATED 32 759 IPR044514 GO:0010048|GO:0040029
Cmo11g00383 759 CDD FN3 372 449 IPR003961 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00421 Cmo11g00383 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00564 Cmo-Chr5:2770063 Cmo11g00383 Cmo-Chr11:1911728 2.56E-15 dispersed
Cmo05g01339 Cmo-Chr5:10391432 Cmo11g00383 Cmo-Chr11:1911728 1.23E-21 dispersed
Cmo10g00639 Cmo-Chr10:2934063 Cmo11g00383 Cmo-Chr11:1911728 1.98E-25 dispersed
Cmo11g00383 Cmo-Chr11:1911728 Cmo12g00159 Cmo-Chr12:1030868 1.58E-17 dispersed
Cmo10g00421 Cmo-Chr10:1924845 Cmo11g00383 Cmo-Chr11:1911728 0 wgd
Cmo11g00383 Cmo-Chr11:1911728 Cmo05g00725 Cmo-Chr5:3770367 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00383 - - csv:101220456 1215.68