Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00384 ATGAACTCTTCGTCCTCTTCTAATTCCTCATCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCTTCAAATTGGCTTGCCTTTTCTCTCTCTAACAATCCCAACTCTCTCTCTCTATTCCACCACCCTAATCCTCCTGATCTCTCCATTTTCTCCCCCAAGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGCCTCCCTTCCAGTTTTCTCCCCATCAAACGCCCCTCACTTACTGTGAAGAATCTGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCACCAGCATCTCCACGCGCCGCCTCCCCACCCTCTCCCTGATACCCTAACCAATCCACCGCCGCCGCCTCCCAAGAAGTCCGTCGATACTTTCGGCCAACGTGGTTATGACAAGGAAGAAAAAGCAGCTCGAGCTTATGATCTCGCCGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGATTACGAAAAAGACCTTGAGAATATGAAGAACATGACCAGACAAGAATTTGTCGCTTCATTAAGAAGGAAAAGCAGCGGTTTCTCTAGAGGAGCTTCTATTTACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGGAGGGTTGCCGGCAATAAAGATCTCTACCTTGGAACTTTCAGCACTCAGGAAGAAGCAGCGGAGGCGTATGATATTGCGGCCATCAAATTCCGAGGCCTAAACGCAGTCACCAACTTCGACATAAGTCGCTACGACGTCAAAAGCATAGCCAGCAGCAACCTTCCCATCGGAGGCATGTCGGCCACCAAATCCAAACCCACCACCGACTCCGCCGCCTCCGAAGACCGCGAGGTCCACCATTCTCCCGTCTCCTCCACCGCGACTCTCCTCCCATCTCACCCCAACACCTCCACTCTAACCTTCGGAATGCCGCCCATCAAACAAGACCCATCCGACCAATACTGGTCCATGTTCGGCTACAACGTTCCACCACCAACATCCTCATCCTCCTTCACAATGTTCCAACAACCTTCAAACCCCGCATCCACAATGTTCCCCCCCGTCGCCGACCTCCCTCCAACCGCCTCGCCGCCGCTCCCCGAAGGAGGCGCCTACGAGCAGCACCAACAATTTGCAGCCCCGATAGCATTAAGTAGAGCAAGCCTGTTTCAAACGCCAATATTTGGAATAGAATGA 1266 52.84 MNSSSSSNSSSSSSSSSSSSSSNWLAFSLSNNPNSLSLFHHPNPPDLSIFSPKLEDFLRGASTPPPLPPPFQFSPHQTPLTYCEESEICDSDLKTIAASFLRGSPSQFPEQHLHQHLHAPPPHPLPDTLTNPPPPPPKKSVDTFGQRGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSATKSKPTTDSAASEDREVHHSPVSSTATLLPSHPNTSTLTFGMPPIKQDPSDQYWSMFGYNVPPPTSSSSFTMFQQPSNPASTMFPPVADLPPTASPPLPEGGAYEQHQQFAAPIALSRASLFQTPIFGIE 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1921034 1923621 - CmoCh11G003840.1 Cmo11g00384 391003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00384 421 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 148 317 - -
Cmo11g00384 421 SUPERFAMILY DNA-binding domain 148 178 IPR016177 GO:0003677
Cmo11g00384 421 SMART rav1_2 212 276 IPR001471 GO:0003700|GO:0006355
Cmo11g00384 421 SMART rav1_2 83 182 IPR001471 GO:0003700|GO:0006355
Cmo11g00384 421 MobiDBLite consensus disorder prediction 312 334 - -
Cmo11g00384 421 ProSiteProfiles AP2/ERF domain profile. 212 270 IPR001471 GO:0003700|GO:0006355
Cmo11g00384 421 Gene3D AP2/ERF domain 137 178 IPR036955 GO:0003700|GO:0006355
Cmo11g00384 421 Gene3D AP2/ERF domain 212 272 IPR036955 GO:0003700|GO:0006355
Cmo11g00384 421 MobiDBLite consensus disorder prediction 285 335 - -
Cmo11g00384 421 MobiDBLite consensus disorder prediction 119 140 - -
Cmo11g00384 421 MobiDBLite consensus disorder prediction 1 24 - -
Cmo11g00384 421 ProSiteProfiles AP2/ERF domain profile. 100 176 IPR001471 GO:0003700|GO:0006355
Cmo11g00384 421 MobiDBLite consensus disorder prediction 105 145 - -
Cmo11g00384 421 Pfam AP2 domain 212 262 IPR001471 GO:0003700|GO:0006355
Cmo11g00384 421 SUPERFAMILY DNA-binding domain 211 272 IPR016177 GO:0003677
Cmo11g00384 421 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 148 317 - -
Cmo11g00384 421 CDD AP2 211 272 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00384 Cmo12g01004 CCT
Cmo11g00384 Cmo12g01004 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00384 Cmo-Chr11:1921034 Cmo20g00077 Cmo-Chr20:403519 6.21E-10 dispersed
Cmo16g00804 Cmo-Chr16:4136796 Cmo11g00384 Cmo-Chr11:1921034 9.37E-09 dispersed
Cmo11g00384 Cmo-Chr11:1921034 Cmo12g01004 Cmo-Chr12:9385816 4.95E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10546 PF00847 AP2 2.60E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00384 K09285 - csv:101210453 452.21