Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00384 | ATGAACTCTTCGTCCTCTTCTAATTCCTCATCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCTTCAAATTGGCTTGCCTTTTCTCTCTCTAACAATCCCAACTCTCTCTCTCTATTCCACCACCCTAATCCTCCTGATCTCTCCATTTTCTCCCCCAAGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGCCTCCCTTCCAGTTTTCTCCCCATCAAACGCCCCTCACTTACTGTGAAGAATCTGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCACCAGCATCTCCACGCGCCGCCTCCCCACCCTCTCCCTGATACCCTAACCAATCCACCGCCGCCGCCTCCCAAGAAGTCCGTCGATACTTTCGGCCAACGTGGTTATGACAAGGAAGAAAAAGCAGCTCGAGCTTATGATCTCGCCGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGATTACGAAAAAGACCTTGAGAATATGAAGAACATGACCAGACAAGAATTTGTCGCTTCATTAAGAAGGAAAAGCAGCGGTTTCTCTAGAGGAGCTTCTATTTACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGGAGGGTTGCCGGCAATAAAGATCTCTACCTTGGAACTTTCAGCACTCAGGAAGAAGCAGCGGAGGCGTATGATATTGCGGCCATCAAATTCCGAGGCCTAAACGCAGTCACCAACTTCGACATAAGTCGCTACGACGTCAAAAGCATAGCCAGCAGCAACCTTCCCATCGGAGGCATGTCGGCCACCAAATCCAAACCCACCACCGACTCCGCCGCCTCCGAAGACCGCGAGGTCCACCATTCTCCCGTCTCCTCCACCGCGACTCTCCTCCCATCTCACCCCAACACCTCCACTCTAACCTTCGGAATGCCGCCCATCAAACAAGACCCATCCGACCAATACTGGTCCATGTTCGGCTACAACGTTCCACCACCAACATCCTCATCCTCCTTCACAATGTTCCAACAACCTTCAAACCCCGCATCCACAATGTTCCCCCCCGTCGCCGACCTCCCTCCAACCGCCTCGCCGCCGCTCCCCGAAGGAGGCGCCTACGAGCAGCACCAACAATTTGCAGCCCCGATAGCATTAAGTAGAGCAAGCCTGTTTCAAACGCCAATATTTGGAATAGAATGA | 1266 | 52.84 | MNSSSSSNSSSSSSSSSSSSSSNWLAFSLSNNPNSLSLFHHPNPPDLSIFSPKLEDFLRGASTPPPLPPPFQFSPHQTPLTYCEESEICDSDLKTIAASFLRGSPSQFPEQHLHQHLHAPPPHPLPDTLTNPPPPPPKKSVDTFGQRGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSATKSKPTTDSAASEDREVHHSPVSSTATLLPSHPNTSTLTFGMPPIKQDPSDQYWSMFGYNVPPPTSSSSFTMFQQPSNPASTMFPPVADLPPTASPPLPEGGAYEQHQQFAAPIALSRASLFQTPIFGIE | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1921034 | 1923621 | - | CmoCh11G003840.1 | Cmo11g00384 | 391003 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00384 | 421 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 148 | 317 | - | - | |
Cmo11g00384 | 421 | SUPERFAMILY | DNA-binding domain | 148 | 178 | IPR016177 | GO:0003677 | |
Cmo11g00384 | 421 | SMART | rav1_2 | 212 | 276 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00384 | 421 | SMART | rav1_2 | 83 | 182 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00384 | 421 | MobiDBLite | consensus disorder prediction | 312 | 334 | - | - | |
Cmo11g00384 | 421 | ProSiteProfiles | AP2/ERF domain profile. | 212 | 270 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00384 | 421 | Gene3D | AP2/ERF domain | 137 | 178 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo11g00384 | 421 | Gene3D | AP2/ERF domain | 212 | 272 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo11g00384 | 421 | MobiDBLite | consensus disorder prediction | 285 | 335 | - | - | |
Cmo11g00384 | 421 | MobiDBLite | consensus disorder prediction | 119 | 140 | - | - | |
Cmo11g00384 | 421 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cmo11g00384 | 421 | ProSiteProfiles | AP2/ERF domain profile. | 100 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00384 | 421 | MobiDBLite | consensus disorder prediction | 105 | 145 | - | - | |
Cmo11g00384 | 421 | Pfam | AP2 domain | 212 | 262 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00384 | 421 | SUPERFAMILY | DNA-binding domain | 211 | 272 | IPR016177 | GO:0003677 | |
Cmo11g00384 | 421 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM | 148 | 317 | - | - | |
Cmo11g00384 | 421 | CDD | AP2 | 211 | 272 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g00384 | Cmo12g01004 | CCT | |
Cmo11g00384 | Cmo12g01004 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00384 | Cmo-Chr11:1921034 | Cmo20g00077 | Cmo-Chr20:403519 | 6.21E-10 | dispersed | |
Cmo16g00804 | Cmo-Chr16:4136796 | Cmo11g00384 | Cmo-Chr11:1921034 | 9.37E-09 | dispersed | |
Cmo11g00384 | Cmo-Chr11:1921034 | Cmo12g01004 | Cmo-Chr12:9385816 | 4.95E-88 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10546 | PF00847 | AP2 | 2.60E-10 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00384 | K09285 | - | csv:101210453 | 452.21 |