Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00395 ATGGCGGCCGCCGATCCCTCACCGGAATTCATTTTTCGCTCAAAGCTCCCGGATATCACCATACCCGACCACCTTCCCTTGCACACATACTGCTTTGAAAACCTCTCCCAATTCAAACACCGTCCATGTCTAATCAATGGCGCTACCGGCGACACGTACACCTACGAAGAAGTCCACGTAACAGCCCGCCGTGTCGCTGCTGGCCTCCATAAGCTCGGCATCGGAAAAGGTGACGTCATTATGCTTCTCCTACAAAACAGTCCACAGTTCGTTTTAGCCTTCCTTGGCGCTTCTTATATTGGAGCCGTGGCAACCATGGCGAACCCGTTCTTCACGCCGCCGGAGATCGCGAAACATGTCGCCTCCTCTGGCCCGAAGCTGATTATAACCCAAGCTGCCATCGCCGAGAAAGTGAAAAGCTTGGTAGACAAAAACGGCGCGAGTATCAAGCTGATATTCATCGACCCTCCACCGGATGGAGAGGTTCATTTTTCGGTGTTGACTGATTATGTAAAGGAAGAGGAAATGCCAGATGTGAAAATCAGTCCGAACGACGTCGTTGCATTGCCTTATTCTTCGGGGACTACAGGTCTTCCAAAAGGAGTTATGCTGACTCATCGAGGGCTGGTGACCAGCGTGGCACAACAAGTGGACGGTGAGAATCCGCACCTCTATATCCGAAGTGATGACGTGGTTTTATGCGTGCTTCCGTTGTTTCATATCTATTCATTGAACTCGATCATGATGTGCTCGTTGCGAGTGGGAGCGGCGATTTTGATCGTACAGAAATTCGACATTAATTACGTGGTGGAATTGGTGGGGAAATATAAGGTGACAATTGCGCCGTTGGTGCCGCCTATTGTGTTAGCAATAGCGAAGAGTCCAGCGGTGGGGGGTTGGGAGATGTCGTCGATACGGCTGGTGCTGTCGGGAGCGGCGCCGTTGGGGAAGGAGCTTGAAGATGCGTTTAGGGCTAAGCTTCCAGATGCGATTCTGGGGCAGGGATATGGCATGACGGAGGCGGGGTCGGCACTGACGTTGTCGTTGGCGTTTGCAAAGGAGAGGTTCCCGATAAAATCGGGAGCCTGTGGGACGTTGATGAGAAATTCCGATATGAAAATTGTAAACCCTCAAACTGGAGCTTCTCTTCCTAGGAATCAAGCTGGAGAGATTTGGATTAGAAGCCCTCACGTGATGAAAGGATACCTCAACAACGAGGAGGCGACGAAGGCCATAATAGACGAACACGGATGGCTGCACACCGGCGACATAGGTTTCGTGGACGAAGACGACGAGGTCTTCATTGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCTGAGTTGGAAGCCTTGCTGATTTCCCACACTCACATAGCCGACGCTGCGGTTATCCCCATGAAAAATGAAGTTGCTGGAGAGGTACCGGTTGCGTTCATTGTCCGATCCGGTGGTTCCAACATCACGGAGGATGAAATTAAGCAATACATTTCGAAACAGGTTGTGTTTTATAAGAGGATTCATCGTGTCTTCTTCGTGGATTCCATCCCTAAAAGTCCTTCTGGTAAAATCTTGCGGAGGCAACTTAGGGAATTGCTCGCAGCCCGTATTCCAAATTAG 1638 50.61 MAAADPSPEFIFRSKLPDITIPDHLPLHTYCFENLSQFKHRPCLINGATGDTYTYEEVHVTARRVAAGLHKLGIGKGDVIMLLLQNSPQFVLAFLGASYIGAVATMANPFFTPPEIAKHVASSGPKLIITQAAIAEKVKSLVDKNGASIKLIFIDPPPDGEVHFSVLTDYVKEEEMPDVKISPNDVVALPYSSGTTGLPKGVMLTHRGLVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIVQKFDINYVVELVGKYKVTIAPLVPPIVLAIAKSPAVGGWEMSSIRLVLSGAAPLGKELEDAFRAKLPDAILGQGYGMTEAGSALTLSLAFAKERFPIKSGACGTLMRNSDMKIVNPQTGASLPRNQAGEIWIRSPHVMKGYLNNEEATKAIIDEHGWLHTGDIGFVDEDDEVFIVDRLKELIKYKGFQVAPAELEALLISHTHIADAAVIPMKNEVAGEVPVAFIVRSGGSNITEDEIKQYISKQVVFYKRIHRVFFVDSIPKSPSGKILRRQLRELLAARIPN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1967164 1970435 + CmoCh11G003950.1 Cmo11g00395 391014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00395 545 Gene3D - 440 542 IPR045851 -
Cmo11g00395 545 CDD 4CL 21 535 - -
Cmo11g00395 545 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Cmo11g00395 545 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Cmo11g00395 545 Pfam AMP-binding enzyme 33 445 IPR000873 -
Cmo11g00395 545 SUPERFAMILY Acetyl-CoA synthetase-like 12 542 - -
Cmo11g00395 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 7 537 - -
Cmo11g00395 545 Gene3D - 4 439 IPR042099 -
Cmo11g00395 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00564 Cmo-Chr8:3456378 Cmo11g00395 Cmo-Chr11:1967164 0 dispersed
Cmo11g00395 Cmo-Chr11:1967164 Cmo14g01057 Cmo-Chr14:5785268 0 dispersed
Cmo19g00221 Cmo-Chr19:1483825 Cmo11g00395 Cmo-Chr11:1967164 5.21E-110 dispersed
Cmo03g01448 Cmo-Chr3:10476073 Cmo11g00395 Cmo-Chr11:1967164 7.23E-25 transposed
Cmo05g00253 Cmo-Chr5:1083646 Cmo11g00395 Cmo-Chr11:1967164 4.08E-14 transposed
Cmo10g00432 Cmo-Chr10:1969688 Cmo11g00395 Cmo-Chr11:1967164 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00395 K01904 - csv:101218077 837.41