Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00414 ATGGGAATTGAGGGTGCGAGTGTTGTAAAGGGTTTCCGTGGCGGATGGGGCGTTGTCTCTAAACCATGCGACTCTTGCAAGACTGCCGCTGCGGCAGTCTACTGTCGACCCGACTCTGCTTTTCTCTGCCTCAATTGCGACACCAAAATTCACGGCGCTAATAAGCTCGCTTCTCGCCACGACCGCGTCTGGATGTGCGAGGTTTGTGAACAAGCTCCCGCTGCGGTCGTGTGTAAGGCTGATGCTGCTGCGCTCTGTGTCACGTGCGATGCCGATATTCACTCCGCTAACCCACTTGCCCGTCGCCATGAGCGTGTCCCGGTCGAGCCTTTTTTTGATTCGGCCGAGTCATTAGTCAAACCCTCTTCCGTTTTCAATTTTCTCATGCCCACTGAATCCAACGTTAGTGGCTGCGACGGCGCCCACCACCATGAGGAGGTGGAGGTTGCCTCTTGGCTTATGTCCAACCCGCCTTTCAACTCTAAGCACGTTGACGGCCCTGAAATCAAGCCTTCTGCCGATCATACGTTCTTCACTGAAATGGATTCTTTTATTGATTTTGATTACCCAAATCCAGTCAGCGCAATTAACGACAGCGTCGTCCCCGTTCAGACAAAGCCACTCTCAACGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGATTTCTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCTCTCAGCCAGAGTGTTTCCTCTTCTTCCCTCGAAGTTGGAGTTGTTCCAGAAGGGAACTCGATGTCCGACATATCATACCCATTGGGTCAAACACCAAGTAAGGGCACGGATTCGGGTTTACCGATGTCGATACCCGGGAACCAAGCGACTCAATTATGTGGAATCGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAGACAATCCGGTACGCATCAAGAAAAGCTTATGCAGAAACCCGTCCCAGAATCAAAGGCCGGTTCGCAAAACGAAGTGATGCGTTATCAGAGGTGGATGAAATGTATGGGTCGGCCGCTTCGTCTGAGTTCCTGACAGAGTTCCAATACGGCGTGGTACCAACGTTTTGA 1116 51.52 MGIEGASVVKGFRGGWGVVSKPCDSCKTAAAAVYCRPDSAFLCLNCDTKIHGANKLASRHDRVWMCEVCEQAPAAVVCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSAESLVKPSSVFNFLMPTESNVSGCDGAHHHEEVEVASWLMSNPPFNSKHVDGPEIKPSADHTFFTEMDSFIDFDYPNPVSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSQSVSSSSLEVGVVPEGNSMSDISYPLGQTPSKGTDSGLPMSIPGNQATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDALSEVDEMYGSAASSEFLTEFQYGVVPTF 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2033089 2034998 + CmoCh11G004140.1 Cmo11g00414 391033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00414 371 CDD Bbox1_BBX-like 22 65 - -
Cmo11g00414 371 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Cmo11g00414 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 371 - -
Cmo11g00414 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 371 IPR045281 GO:0009909
Cmo11g00414 371 Pfam B-box zinc finger 21 61 IPR000315 GO:0008270
Cmo11g00414 371 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Cmo11g00414 371 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515
Cmo11g00414 371 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Cmo11g00414 371 Pfam CCT motif 298 340 IPR010402 GO:0005515
Cmo11g00414 371 CDD Bbox1_BBX-like 66 108 - -
Cmo11g00414 371 SMART bboxneu5 66 108 IPR000315 GO:0008270
Cmo11g00414 371 SMART bboxneu5 18 65 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00414 - - - csv:101214816 624.394
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00714 Cmo11g00414 CCT
Cmo10g00449 Cmo11g00414 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00471 Cmo-Chr1:2251358 Cmo11g00414 Cmo-Chr11:2033089 3.89E-06 dispersed
Cmo05g00340 Cmo-Chr5:1519922 Cmo11g00414 Cmo-Chr11:2033089 3.59E-112 dispersed
Cmo11g00414 Cmo-Chr11:2033089 Cmo12g00329 Cmo-Chr12:2050764 9.23E-103 dispersed
Cmo20g00696 Cmo-Chr20:3448685 Cmo11g00414 Cmo-Chr11:2033089 1.02E-07 dispersed
Cmo10g00449 Cmo-Chr10:2020058 Cmo11g00414 Cmo-Chr11:2033089 0 wgd
Cmo11g00414 Cmo-Chr11:2033089 Cmo05g00714 Cmo-Chr5:3664111 2.94E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g1077 . . . . . . . . Cmo10g00449 Cmo11g00414 Cma05g00679 . Car05g00623 . Sed08g0523 Cpe04g01287 Cpe18g00605 Bhi02g00794 Tan09g1648 Cmetu02g0351 . Hepe09g0511 . . Cla11g01201 Cam11g1260 Cec11g1272 Cco11g1273 Clacu11g1418 Cmu11g1240 Cre11g1658 . . Cone11ag0169 Cone18ag1317 Lsi06g01109 Csa02g00615 Chy05g00918 Cme02g01520 . . . Bda09g00945 Bpe08g00686 Bpe13g01202 Bma01g00353 Bma06g00924 Sed03g2846 Cmo05g00714 . Cma10g00418 Cma11g00415 Car10g00391 . Cpe11g00603 . Bhi06g01274 Tan08g0825 Cmetu05g0666 . Hepe08g2141 . . Cla06g01299 Cam06g1444 Cec06g1497 Cco06g1497 Clacu06g1404 Cmu06g1365 Cre06g2174 Lsi11g00747 Csa01g02115 Chy02g02191 Cme05g01392
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00329 CST 6 323 C2C2-CO-like Transcription Factor Family AT5G15850 51.1 2.6e-42 170.2
Cmo12g00329 CST 4 332 C2C2-CO-like Transcription Factor Family AT3G02380 50.7 1.4e-40 164.5
Cmo05g00340 CST 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 4.1e-83 305.8
Cmo12g00329 CST 1 329 C2C2-CO-like Transcription Factor Family AT5G24930 59.4 2.4e-75 280.0
Cmo11g00414 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.9e-56 217.2
Cmo10g00449 CCT,CST 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 9.5e-56 214.9
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 56.0 2.0e-93 340.1
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT3G07650 55.4 5.1e-89 325.5
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 8.2e-87 318.2
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.2 4.1e-86 315.8
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 7.5e-88 321.6
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 2.2e-87 320.1
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.7e-84 310.5
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 6.5e-84 308.5
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 7.5e-88 321.6
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 2.2e-87 320.1
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.7e-84 310.5
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 6.5e-84 308.5
Cmo11g01107 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.6 1.2e-52 204.5
Cmo01g02006 CCT,ECH 1 196 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 2.9e-51 199.9
Cmo20g00825 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 51.2 1.8e-45 180.6
Cmo04g00707 CST 1 276 C2C2-CO-like Transcription Factor Family AT1G78600 50.2 1.8e-74 276.9
Cmo04g00794 CCT,ECH 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 3.8e-55 211.8
Cmo07g00440 CCT,CST,ECH 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 7.0e-49 191.0
Cmo03g00728 CCT,CST,ECH 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 1.0e-47 187.2
Cmo16g00660 . 1 97 C2C2-CO-like Transcription Factor Family AT2G21320 81.4 5.0e-39 158.3
Cmo04g00794 CCT,ECH 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.4 2.8e-56 215.7
Cmo07g00440 CCT,CST,ECH 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 68.2 4.2e-52 201.8
Cmo03g00728 CCT,CST,ECH 1 168 C2C2-CO-like Transcription Factor Family AT4G38960 60.1 2.8e-48 189.1
Cmo16g00660 . 1 97 C2C2-CO-like Transcription Factor Family AT4G38960 81.4 2.2e-40 162.9
Cmo11g01107 . 1 233 C2C2-CO-like Transcription Factor Family AT4G39070 53.8 4.6e-54 208.8
Cmo12g00380 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.5e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10550 PF00643 zf-B_box 7.00E-07 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00414 Cmo_Chr11 FPKM 0.0 0.0 0.0 0.0 2.995416 2.644315 2.816399 0.0 0.0 0.0