Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00414 ATGGGAATTGAGGGTGCGAGTGTTGTAAAGGGTTTCCGTGGCGGATGGGGCGTTGTCTCTAAACCATGCGACTCTTGCAAGACTGCCGCTGCGGCAGTCTACTGTCGACCCGACTCTGCTTTTCTCTGCCTCAATTGCGACACCAAAATTCACGGCGCTAATAAGCTCGCTTCTCGCCACGACCGCGTCTGGATGTGCGAGGTTTGTGAACAAGCTCCCGCTGCGGTCGTGTGTAAGGCTGATGCTGCTGCGCTCTGTGTCACGTGCGATGCCGATATTCACTCCGCTAACCCACTTGCCCGTCGCCATGAGCGTGTCCCGGTCGAGCCTTTTTTTGATTCGGCCGAGTCATTAGTCAAACCCTCTTCCGTTTTCAATTTTCTCATGCCCACTGAATCCAACGTTAGTGGCTGCGACGGCGCCCACCACCATGAGGAGGTGGAGGTTGCCTCTTGGCTTATGTCCAACCCGCCTTTCAACTCTAAGCACGTTGACGGCCCTGAAATCAAGCCTTCTGCCGATCATACGTTCTTCACTGAAATGGATTCTTTTATTGATTTTGATTACCCAAATCCAGTCAGCGCAATTAACGACAGCGTCGTCCCCGTTCAGACAAAGCCACTCTCAACGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGATTTCTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCTCTCAGCCAGAGTGTTTCCTCTTCTTCCCTCGAAGTTGGAGTTGTTCCAGAAGGGAACTCGATGTCCGACATATCATACCCATTGGGTCAAACACCAAGTAAGGGCACGGATTCGGGTTTACCGATGTCGATACCCGGGAACCAAGCGACTCAATTATGTGGAATCGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAGACAATCCGGTACGCATCAAGAAAAGCTTATGCAGAAACCCGTCCCAGAATCAAAGGCCGGTTCGCAAAACGAAGTGATGCGTTATCAGAGGTGGATGAAATGTATGGGTCGGCCGCTTCGTCTGAGTTCCTGACAGAGTTCCAATACGGCGTGGTACCAACGTTTTGA 1116 51.52 MGIEGASVVKGFRGGWGVVSKPCDSCKTAAAAVYCRPDSAFLCLNCDTKIHGANKLASRHDRVWMCEVCEQAPAAVVCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSAESLVKPSSVFNFLMPTESNVSGCDGAHHHEEVEVASWLMSNPPFNSKHVDGPEIKPSADHTFFTEMDSFIDFDYPNPVSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSQSVSSSSLEVGVVPEGNSMSDISYPLGQTPSKGTDSGLPMSIPGNQATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDALSEVDEMYGSAASSEFLTEFQYGVVPTF 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2033089 2034998 + CmoCh11G004140.1 Cmo11g00414 391033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00414 371 CDD Bbox1_BBX-like 22 65 - -
Cmo11g00414 371 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Cmo11g00414 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 371 - -
Cmo11g00414 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 371 IPR045281 GO:0009909
Cmo11g00414 371 Pfam B-box zinc finger 21 61 IPR000315 GO:0008270
Cmo11g00414 371 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Cmo11g00414 371 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515
Cmo11g00414 371 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Cmo11g00414 371 Pfam CCT motif 298 340 IPR010402 GO:0005515
Cmo11g00414 371 CDD Bbox1_BBX-like 66 108 - -
Cmo11g00414 371 SMART bboxneu5 66 108 IPR000315 GO:0008270
Cmo11g00414 371 SMART bboxneu5 18 65 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00714 Cmo11g00414 CCT
Cmo10g00449 Cmo11g00414 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00471 Cmo-Chr1:2251358 Cmo11g00414 Cmo-Chr11:2033089 3.89E-06 dispersed
Cmo05g00340 Cmo-Chr5:1519922 Cmo11g00414 Cmo-Chr11:2033089 3.59E-112 dispersed
Cmo11g00414 Cmo-Chr11:2033089 Cmo12g00329 Cmo-Chr12:2050764 9.23E-103 dispersed
Cmo20g00696 Cmo-Chr20:3448685 Cmo11g00414 Cmo-Chr11:2033089 1.02E-07 dispersed
Cmo10g00449 Cmo-Chr10:2020058 Cmo11g00414 Cmo-Chr11:2033089 0 wgd
Cmo11g00414 Cmo-Chr11:2033089 Cmo05g00714 Cmo-Chr5:3664111 2.94E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10550 PF00643 zf-B_box 7.00E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00414 - - csv:101214816 624.394