Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00414 | ATGGGAATTGAGGGTGCGAGTGTTGTAAAGGGTTTCCGTGGCGGATGGGGCGTTGTCTCTAAACCATGCGACTCTTGCAAGACTGCCGCTGCGGCAGTCTACTGTCGACCCGACTCTGCTTTTCTCTGCCTCAATTGCGACACCAAAATTCACGGCGCTAATAAGCTCGCTTCTCGCCACGACCGCGTCTGGATGTGCGAGGTTTGTGAACAAGCTCCCGCTGCGGTCGTGTGTAAGGCTGATGCTGCTGCGCTCTGTGTCACGTGCGATGCCGATATTCACTCCGCTAACCCACTTGCCCGTCGCCATGAGCGTGTCCCGGTCGAGCCTTTTTTTGATTCGGCCGAGTCATTAGTCAAACCCTCTTCCGTTTTCAATTTTCTCATGCCCACTGAATCCAACGTTAGTGGCTGCGACGGCGCCCACCACCATGAGGAGGTGGAGGTTGCCTCTTGGCTTATGTCCAACCCGCCTTTCAACTCTAAGCACGTTGACGGCCCTGAAATCAAGCCTTCTGCCGATCATACGTTCTTCACTGAAATGGATTCTTTTATTGATTTTGATTACCCAAATCCAGTCAGCGCAATTAACGACAGCGTCGTCCCCGTTCAGACAAAGCCACTCTCAACGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGATTTCTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCTCTCAGCCAGAGTGTTTCCTCTTCTTCCCTCGAAGTTGGAGTTGTTCCAGAAGGGAACTCGATGTCCGACATATCATACCCATTGGGTCAAACACCAAGTAAGGGCACGGATTCGGGTTTACCGATGTCGATACCCGGGAACCAAGCGACTCAATTATGTGGAATCGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAGACAATCCGGTACGCATCAAGAAAAGCTTATGCAGAAACCCGTCCCAGAATCAAAGGCCGGTTCGCAAAACGAAGTGATGCGTTATCAGAGGTGGATGAAATGTATGGGTCGGCCGCTTCGTCTGAGTTCCTGACAGAGTTCCAATACGGCGTGGTACCAACGTTTTGA | 1116 | 51.52 | MGIEGASVVKGFRGGWGVVSKPCDSCKTAAAAVYCRPDSAFLCLNCDTKIHGANKLASRHDRVWMCEVCEQAPAAVVCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSAESLVKPSSVFNFLMPTESNVSGCDGAHHHEEVEVASWLMSNPPFNSKHVDGPEIKPSADHTFFTEMDSFIDFDYPNPVSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSQSVSSSSLEVGVVPEGNSMSDISYPLGQTPSKGTDSGLPMSIPGNQATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDALSEVDEMYGSAASSEFLTEFQYGVVPTF | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2033089 | 2034998 | + | CmoCh11G004140.1 | Cmo11g00414 | 391033 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00414 | 371 | CDD | Bbox1_BBX-like | 22 | 65 | - | - | |
Cmo11g00414 | 371 | ProSiteProfiles | Zinc finger B-box type profile. | 61 | 108 | IPR000315 | GO:0008270 | |
Cmo11g00414 | 371 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 5 | 9 | 371 | - | - | |
Cmo11g00414 | 371 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 4 | 9 | 371 | IPR045281 | GO:0009909 | |
Cmo11g00414 | 371 | Pfam | B-box zinc finger | 21 | 61 | IPR000315 | GO:0008270 | |
Cmo11g00414 | 371 | Pfam | B-box zinc finger | 63 | 108 | IPR000315 | GO:0008270 | |
Cmo11g00414 | 371 | ProSiteProfiles | CCT domain profile. | 298 | 340 | IPR010402 | GO:0005515 | |
Cmo11g00414 | 371 | ProSiteProfiles | Zinc finger B-box type profile. | 23 | 65 | IPR000315 | GO:0008270 | |
Cmo11g00414 | 371 | Pfam | CCT motif | 298 | 340 | IPR010402 | GO:0005515 | |
Cmo11g00414 | 371 | CDD | Bbox1_BBX-like | 66 | 108 | - | - | |
Cmo11g00414 | 371 | SMART | bboxneu5 | 66 | 108 | IPR000315 | GO:0008270 | |
Cmo11g00414 | 371 | SMART | bboxneu5 | 18 | 65 | IPR000315 | GO:0008270 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00714 | Cmo11g00414 | CCT | |
Cmo10g00449 | Cmo11g00414 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00471 | Cmo-Chr1:2251358 | Cmo11g00414 | Cmo-Chr11:2033089 | 3.89E-06 | dispersed | |
Cmo05g00340 | Cmo-Chr5:1519922 | Cmo11g00414 | Cmo-Chr11:2033089 | 3.59E-112 | dispersed | |
Cmo11g00414 | Cmo-Chr11:2033089 | Cmo12g00329 | Cmo-Chr12:2050764 | 9.23E-103 | dispersed | |
Cmo20g00696 | Cmo-Chr20:3448685 | Cmo11g00414 | Cmo-Chr11:2033089 | 1.02E-07 | dispersed | |
Cmo10g00449 | Cmo-Chr10:2020058 | Cmo11g00414 | Cmo-Chr11:2033089 | 0 | wgd | |
Cmo11g00414 | Cmo-Chr11:2033089 | Cmo05g00714 | Cmo-Chr5:3664111 | 2.94E-98 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10550 | PF00643 | zf-B_box | 7.00E-07 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00414 | - | - | csv:101214816 | 624.394 |