Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00421 ATGTTGATATCAGTCAGAGAAGCTGCTGCAGCTTCTTCTTCGCCCCTTTGCTTCACCCTCTCCACCCAATATCTTACCAATTCTAAGCGCTTTCCAAGGCCTAGACTTTCATTCACCCGAGCGTCCTTCTCTGTTCCTAACAAGCCCCGCGCTACCAAGTCCTGGAACCTTGGCCTCACTTCCAACAGTTCTGAGAGCTCAGTTTTTGATCCCTTGGGAATCCGTCCAGATCTTTCTTCTGAATTAAGTTGTGGGTGGGAAAGTTTTCTTGGCTTTTGGGGGCAAACATTTGACAGTTCTTCAAGCACAAAACGAGATAAAGGTCCCTCAGCACGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGACTTCTTCAAAGGTCCATTGCCAGGAAAATTTCTACAGCTCTTGGGCTATTTAGCATTATCAAGGCTTGGAATCTATATCCCTCTTGGTGGAGTGAACCGAGAGGCTTTTGTTGGGAACTTGGATCAGAACAGCTTATTGAGCACTTTAGATTCATTTTCTGGTGGAGGCATTGGCAGATTAGGGATATGCTCCCTTGGCATTGTTCCCTTCATCAATGCATCAATTGTCTTCCAGCTTCTTACACAAATTTATCCAAAATTGCAAGAACTTCAGAAAAGAGAAGGTGAAGCTGGGCGAAAGAAAATTCTTCAATACACTCGATATGCCTCAGTTGGGTTTGCAATTGTACAAGCAATTGGTCAAGTTCTGTACCTTCGCCCCTATGTTAATGATTTTAGTACAGAGTGGGTGCTTTCTTCTGTTACTTTATTAACACTTGGCTCAGTCATAACAACGTACATTGGGGAACGGATCACAGACCTAAAGCTAGGTAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATCTACCAGCATCCTTTGGAAGAACAGCTGCACAAGCTTTACAGGATGGTAACTATGTTGGATTGGTTGCTATTATAATCTCCTTCTTTCTATTGGTACTTGGAATCGTATATGTTCAGGAAGCAGAAAGGAAAATCCCGCTCAACTATGCTTCAAGATACACAAGCAGCGGTGGAGGGCTTCAGAAATCTGCTTACCTTCCCTTCAAGGTAAATAGTTCTGGTGTAATGCCGATCATTTTTTCAACATCTACGTTGTCCCTGCCGGGTACTCTAGCTCGCTTCACGGGTTTATCTGTCCTAAAGAACGCTGCATTTGCTTTAAATCCAGGAGGCTCATTCTATCTTCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACATTCCTACAGTTGGATCCCGATGATGTGAGCGAACAATTGAAGCGGCAGGGTGCTTCAATTCCCCTCGTCCGTCCGGGCAAAAGTACAGCTTCGTTTCTGAAAGCGGTTCTAAGTCGGATTTCAGTTCTTGGTTCTGCTTTCTTGGCAATCCTTGCTGCTGGTCCAGCGGTGATTGAGCAAACAACACACTTAACAGCATTTCGAGGATTTGCAGGAACCTCTGTTCTCATTCTTGTCGGTTGTGCTACAGACACTGCCAGAAAAGTACAAGCTGAGATAATCTCTCAGAAGTACAAGAACATAGAGTTCTATGACATCGATAGGTATACTCCATGA 1641 44.12 MLISVREAAAASSSPLCFTLSTQYLTNSKRFPRPRLSFTRASFSVPNKPRATKSWNLGLTSNSSESSVFDPLGIRPDLSSELSCGWESFLGFWGQTFDSSSSTKRDKGPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINASIVFQLLTQIYPKLQELQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTAAQALQDGNYVGLVAIIISFFLLVLGIVYVQEAERKIPLNYASRYTSSGGGLQKSAYLPFKVNSSGVMPIIFSTSTLSLPGTLARFTGLSVLKNAAFALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRYTP 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2070928 2075272 + CmoCh11G004210.1 Cmo11g00421 391040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00421 546 Hamap Protein translocase subunit SecY [secY]. 125 537 IPR026593 -
Cmo11g00421 546 Pfam SecY 189 520 IPR002208 GO:0015031|GO:0016020
Cmo11g00421 546 PRINTS Preprotein translocase SecY subunit signature 137 155 - -
Cmo11g00421 546 PRINTS Preprotein translocase SecY subunit signature 187 207 - -
Cmo11g00421 546 PRINTS Preprotein translocase SecY subunit signature 229 252 - -
Cmo11g00421 546 PRINTS Preprotein translocase SecY subunit signature 261 286 - -
Cmo11g00421 546 PRINTS Preprotein translocase SecY subunit signature 287 310 - -
Cmo11g00421 546 PRINTS Preprotein translocase SecY subunit signature 378 397 - -
Cmo11g00421 546 PRINTS Preprotein translocase SecY subunit signature 417 439 - -
Cmo11g00421 546 PRINTS Preprotein translocase SecY subunit signature 472 490 - -
Cmo11g00421 546 PRINTS Preprotein translocase SecY subunit signature 506 524 - -
Cmo11g00421 546 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 54 542 IPR002208 GO:0015031|GO:0016020
Cmo11g00421 546 SUPERFAMILY Preprotein translocase SecY subunit 129 527 IPR023201 -
Cmo11g00421 546 Gene3D SecY subunit domain 128 533 IPR023201 -
Cmo11g00421 546 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 54 542 - -
Cmo11g00421 546 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 136 533 IPR002208 GO:0015031|GO:0016020
Cmo11g00421 546 ProSitePatterns Protein secY signature 1. 188 207 IPR030659 -
Cmo11g00421 546 ProSitePatterns Protein secY signature 2. 280 297 IPR030659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00421 Cmo-Chr11:2070928 Cmo19g00044 Cmo-Chr19:253393 3.77E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00421 K10956 - csv:101222431 971.844