Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00421 | ATGTTGATATCAGTCAGAGAAGCTGCTGCAGCTTCTTCTTCGCCCCTTTGCTTCACCCTCTCCACCCAATATCTTACCAATTCTAAGCGCTTTCCAAGGCCTAGACTTTCATTCACCCGAGCGTCCTTCTCTGTTCCTAACAAGCCCCGCGCTACCAAGTCCTGGAACCTTGGCCTCACTTCCAACAGTTCTGAGAGCTCAGTTTTTGATCCCTTGGGAATCCGTCCAGATCTTTCTTCTGAATTAAGTTGTGGGTGGGAAAGTTTTCTTGGCTTTTGGGGGCAAACATTTGACAGTTCTTCAAGCACAAAACGAGATAAAGGTCCCTCAGCACGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGACTTCTTCAAAGGTCCATTGCCAGGAAAATTTCTACAGCTCTTGGGCTATTTAGCATTATCAAGGCTTGGAATCTATATCCCTCTTGGTGGAGTGAACCGAGAGGCTTTTGTTGGGAACTTGGATCAGAACAGCTTATTGAGCACTTTAGATTCATTTTCTGGTGGAGGCATTGGCAGATTAGGGATATGCTCCCTTGGCATTGTTCCCTTCATCAATGCATCAATTGTCTTCCAGCTTCTTACACAAATTTATCCAAAATTGCAAGAACTTCAGAAAAGAGAAGGTGAAGCTGGGCGAAAGAAAATTCTTCAATACACTCGATATGCCTCAGTTGGGTTTGCAATTGTACAAGCAATTGGTCAAGTTCTGTACCTTCGCCCCTATGTTAATGATTTTAGTACAGAGTGGGTGCTTTCTTCTGTTACTTTATTAACACTTGGCTCAGTCATAACAACGTACATTGGGGAACGGATCACAGACCTAAAGCTAGGTAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATCTACCAGCATCCTTTGGAAGAACAGCTGCACAAGCTTTACAGGATGGTAACTATGTTGGATTGGTTGCTATTATAATCTCCTTCTTTCTATTGGTACTTGGAATCGTATATGTTCAGGAAGCAGAAAGGAAAATCCCGCTCAACTATGCTTCAAGATACACAAGCAGCGGTGGAGGGCTTCAGAAATCTGCTTACCTTCCCTTCAAGGTAAATAGTTCTGGTGTAATGCCGATCATTTTTTCAACATCTACGTTGTCCCTGCCGGGTACTCTAGCTCGCTTCACGGGTTTATCTGTCCTAAAGAACGCTGCATTTGCTTTAAATCCAGGAGGCTCATTCTATCTTCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACATTCCTACAGTTGGATCCCGATGATGTGAGCGAACAATTGAAGCGGCAGGGTGCTTCAATTCCCCTCGTCCGTCCGGGCAAAAGTACAGCTTCGTTTCTGAAAGCGGTTCTAAGTCGGATTTCAGTTCTTGGTTCTGCTTTCTTGGCAATCCTTGCTGCTGGTCCAGCGGTGATTGAGCAAACAACACACTTAACAGCATTTCGAGGATTTGCAGGAACCTCTGTTCTCATTCTTGTCGGTTGTGCTACAGACACTGCCAGAAAAGTACAAGCTGAGATAATCTCTCAGAAGTACAAGAACATAGAGTTCTATGACATCGATAGGTATACTCCATGA | 1641 | 44.12 | MLISVREAAAASSSPLCFTLSTQYLTNSKRFPRPRLSFTRASFSVPNKPRATKSWNLGLTSNSSESSVFDPLGIRPDLSSELSCGWESFLGFWGQTFDSSSSTKRDKGPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINASIVFQLLTQIYPKLQELQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTAAQALQDGNYVGLVAIIISFFLLVLGIVYVQEAERKIPLNYASRYTSSGGGLQKSAYLPFKVNSSGVMPIIFSTSTLSLPGTLARFTGLSVLKNAAFALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRYTP | 546 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2070928 | 2075272 | + | CmoCh11G004210.1 | Cmo11g00421 | 391040 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00421 | 546 | Hamap | Protein translocase subunit SecY [secY]. | 125 | 537 | IPR026593 | - | |
Cmo11g00421 | 546 | Pfam | SecY | 189 | 520 | IPR002208 | GO:0015031|GO:0016020 | |
Cmo11g00421 | 546 | PRINTS | Preprotein translocase SecY subunit signature | 137 | 155 | - | - | |
Cmo11g00421 | 546 | PRINTS | Preprotein translocase SecY subunit signature | 187 | 207 | - | - | |
Cmo11g00421 | 546 | PRINTS | Preprotein translocase SecY subunit signature | 229 | 252 | - | - | |
Cmo11g00421 | 546 | PRINTS | Preprotein translocase SecY subunit signature | 261 | 286 | - | - | |
Cmo11g00421 | 546 | PRINTS | Preprotein translocase SecY subunit signature | 287 | 310 | - | - | |
Cmo11g00421 | 546 | PRINTS | Preprotein translocase SecY subunit signature | 378 | 397 | - | - | |
Cmo11g00421 | 546 | PRINTS | Preprotein translocase SecY subunit signature | 417 | 439 | - | - | |
Cmo11g00421 | 546 | PRINTS | Preprotein translocase SecY subunit signature | 472 | 490 | - | - | |
Cmo11g00421 | 546 | PRINTS | Preprotein translocase SecY subunit signature | 506 | 524 | - | - | |
Cmo11g00421 | 546 | PANTHER | SECY/SEC61-ALPHA FAMILY MEMBER | 54 | 542 | IPR002208 | GO:0015031|GO:0016020 | |
Cmo11g00421 | 546 | SUPERFAMILY | Preprotein translocase SecY subunit | 129 | 527 | IPR023201 | - | |
Cmo11g00421 | 546 | Gene3D | SecY subunit domain | 128 | 533 | IPR023201 | - | |
Cmo11g00421 | 546 | PANTHER | PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC | 54 | 542 | - | - | |
Cmo11g00421 | 546 | TIGRFAM | 3a0501s007: preprotein translocase, SecY subunit | 136 | 533 | IPR002208 | GO:0015031|GO:0016020 | |
Cmo11g00421 | 546 | ProSitePatterns | Protein secY signature 1. | 188 | 207 | IPR030659 | - | |
Cmo11g00421 | 546 | ProSitePatterns | Protein secY signature 2. | 280 | 297 | IPR030659 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00421 | Cmo-Chr11:2070928 | Cmo19g00044 | Cmo-Chr19:253393 | 3.77E-37 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00421 | K10956 | - | csv:101222431 | 971.844 |