Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00422 ATGGATTCACTGCTTCTCCAAGTAAACGGAAGATTCTTCCCTTCGCCGCCACAGCTACAGCCTTACTATCTTGATGCACGGCCTCCTCCTTTTGCCCAGCCGAGTGGATTCAACTTGGAGAACAAGGTGAGTCCAAGTATACTCCTCATCATAATCATTCTAGCTATCGTCTTCTTCGTCTCTGGTTTGCTTCATCTTCTCGTTAGATTCCTCTGGACTCCCCCGTTACAGAGAGACCCTGAAAGTTCAGACAATGTTACTGCCTTTCAAGGTCAATTACAGCAGCTCTTTCATCTCCATGACTCTGGGGTTGACCAGTCCTTCATTGATACACTTCCTGTTTTCCATTACAAAGCCATTATTGGATCCAAGTCCCCATTTGATTGCGCTGTTTGTCTATGTGAGTTTGAGCCTGAGGACAAGCTCAGGCTGTTGCCTAAATGCAGCCATGCCTTTCACACAGAGTGTATTGATACATGGCTTTTGTCTCACTCAACCTGCCCCCTTTGTAGATCTAGTTTGCTACCGGATCATTTCTCTCCACATACCAGTTATGCGCCAATTGTTCTTGTTCTCGAATCTGGGAGTGAGAGCTCTAGAGATAATGTGTCGAACACAGAGGCTACAAATCCGATTACAGGGTCAAATTCGCAAGTGGGTCTTGGTGGGGATAGCGAATTTGACGCTGGGTCGAGCGAGATTGGGAAATTAGAGGACTCAAAAGCAACTGTAGTGACTGTGAAGCTTGGAAAATACAAAAATATCGATGCTGGTGAAGGTGGAAGTAGCGGGAACAAGAATATGGATTCTCGTAGGTGTTTTTCAATGGAGTCTTTTGAATATGTAATGGAGGAGAATTCGTCGCTGAAAGTGGCCATTAGGAGCACCCCAGCGAAAAAGCAGCCAAGCAGGAAGCCAGCTCTGCCATTGACACCAGGTTACAGAGCAGCCATGTCCGAATGCGACTGCGAATCCAGAAGAGAGTTCCGACTCAGTGGGATTGAACCGTTTCGAGAAGTGAAAAGGGGCGAGAACACTGATAGAAATTGCAAGAAAATAGACAGTTTCTCAGTATCGAAGATTTGGCTAAGAGGAAAAAACCAGAGAGAAACGCCCACAGAATCATCAAGAAGGGCAGTTTCGTTTCGATTTCCCATTCAGAAGAATGGTGGGGATTGGAATGCTTCAGAGATGGGCGTTTCCAGATGGGAAAATGAAATAATCCGAAATGAAACGGAATTGGATGAAGAAAACCAGAGTCGTTGCAGTCTCGATTCTCAATTCAATCAATCTTTCGCGAAGAGAACGTTGGTATGGCTGATGGGAAAACAAAACAAGATCGCCTCTCTCTCTCTCTTTTTCTTCCTCTGTGCTTCTCCTCCAGCTACTAGGCCATGCTGCTGCTATTTTGATGGGTCATTGAGAATTTCTCGTTTCAGCTTCTTTCTTTTGCTTATGGGCATGGAACTGAGGAAGGAAAAGCTTGTTAGGTTTTATTCTGATCACAAAAAACATAAGAAATCTTCCATTGGGAACAACAATGAAGCAGGGCAACTTGAGAAGTCATCATCGAAATACTATATTCCATCGTCGACATTCTTAATACCTGACAATGGATTAGGGGCAAGCAAAAGTAAATCTGCTGAAACTTTTAGAACTGAGAAGTCCAAAGTGTTTCCAGAGGACCATGAGCCATGGAGCAGAAGAATACTAGACCCTGGCAGAAAAATTGTTTTGAAATGGAACCGGGTGTTCATTTGCTCATGTTTATTGGCACTCTTTGTTGACCCGCTGTACCTTTACTTGCCATCTTTGGCTGGGAATGGGAAATCCTCATGTGTGAGGACAGACTGGAAGTTGCGAATTGTTGTGACCTGTTTCCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATCAAGTTCAGAACAGCTTATGTTGCTCCTAGCTCTCGAGTTTTTGGGAGAGGTGAGCTTGTGATGGATTCGAAGATGATAGCAAAGAGGTATCTTAGATCTGACTTTTTTGTCGATCTAATTGCCACGTTGCCTCTCCCTCAGATTGTCATCTGGTTTATCATACCCGCAACAAGAAGTCGTCTAACTGATCATAAAAACAATGCGCTTGCGCTTATTGTTCTGCTTCAATATATTCCGAGATTGTATTTGATTTTCCCTCTTAGTTCAGAGATCATCAAAGCGAATGGAGTTGTTACAAAAACTGCTTGGGCAGGAGCTGCTTATAATCTTCTACTCTATATGTTGGCTAGCCATGTTCTAGGTGCGACATGGTATTTGCTGTCAGTTGATAGATATACATCATGCTGGAAATCATTATGTAGGAAGAAGGAATATAATCCACTAGAATGCAATCCAACTTTTTTTGATTGCGATACACTTAACCTTATTGACCGCAATACATGGGCTAATAGTACACTTGTTTTCGACAAATGTGGCCCTAGTGGAATTTTCAAGTATGGCATTTTTGGGAATGCAATGTCAAAGAATGTTGTCTCTTCAAGCTTTGTTGAAAAGTATTTCTATTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAGAATTTGGAAACAACCACTTTCATTGGTGAGACACTGTTTGCTGTGCTTATAGCCATCTTAGGCCTTGTATTATTTGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTCACTGTGAGACTTGAAGAATGGAGACTAAAGCGAAGAGACACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAGCGACGTGTTCGACGTTTTGTACAATATAAGTGGGTGGCAACTCGAGGAGTTGATGAAGAAGCCATCTTACAGAGCTTGCCGGCTGATCTTCGACGAGATATTCAGTGCCACCTCTGTCTAGATCTTGTCCGACGAGTCCCTTTCTTCTCACAGATGGATGATCAGCTACTAGATGCAATATGTGAACGTCTGATATCCTCCTTGAGCACTGAGGGTACCTATATTGTTCGAGAGGGTGACCCAGTAACCGAGATGCTGTTCGTTATCCGAGGCAGATTGGAGAGTTCTACTACAAATGGAGGTCGCTCTGGTTTCTTCAACTCCATAACGTTGCGTCCTGGAGACTTTTGTGGGGAGGAACTACTTTCTTGGGCGTTGCACCCAAAATCCACCACCAACTTGCCCTCCTCAACTAGAACAGTCAGAGCGCTCAATGAAGTTGAAGCTTTTGCACTCCGTGCTGAAGATCTTAAATTTGTAGCCAACCAATTTAGACGTCTGCACAGTAAAAAGTTGCAGCACACATTCCGCTTTTACTCTCATCATTGGAGAACATGGGCAGCTTGCTTTATTCAAGCTGCTTGGCGTCGCCATAAGAAAAGAATGATGGCAAAAGATCTCTTAATGAGGGAATCGTTTATATTATCTGAAGAAGTGGCTAGTGAAACTGGCCAAGGAGGAGGGGAACAATTTTGTGTTGTTTCAAATCCTTCTCAGACAAAAATGAATCTGGATGTTACCTTACTGGCTTCAAGGTTTGCTGCAAACGCAAGGAGAGGCGCTCAGAAAATGAAAGATGACATGCCAAAGCTGCAGAAGCCTGATGAACCCGACTTTTCCATTGAGCCAGATAGATAA 3648 43.61 MDSLLLQVNGRFFPSPPQLQPYYLDARPPPFAQPSGFNLENKVSPSILLIIIILAIVFFVSGLLHLLVRFLWTPPLQRDPESSDNVTAFQGQLQQLFHLHDSGVDQSFIDTLPVFHYKAIIGSKSPFDCAVCLCEFEPEDKLRLLPKCSHAFHTECIDTWLLSHSTCPLCRSSLLPDHFSPHTSYAPIVLVLESGSESSRDNVSNTEATNPITGSNSQVGLGGDSEFDAGSSEIGKLEDSKATVVTVKLGKYKNIDAGEGGSSGNKNMDSRRCFSMESFEYVMEENSSLKVAIRSTPAKKQPSRKPALPLTPGYRAAMSECDCESRREFRLSGIEPFREVKRGENTDRNCKKIDSFSVSKIWLRGKNQRETPTESSRRAVSFRFPIQKNGGDWNASEMGVSRWENEIIRNETELDEENQSRCSLDSQFNQSFAKRTLVWLMGKQNKIASLSLFFFLCASPPATRPCCCYFDGSLRISRFSFFLLLMGMELRKEKLVRFYSDHKKHKKSSIGNNNEAGQLEKSSSKYYIPSSTFLIPDNGLGASKSKSAETFRTEKSKVFPEDHEPWSRRILDPGRKIVLKWNRVFICSCLLALFVDPLYLYLPSLAGNGKSSCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDSKMIAKRYLRSDFFVDLIATLPLPQIVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSLCRKKEYNPLECNPTFFDCDTLNLIDRNTWANSTLVFDKCGPSGIFKYGIFGNAMSKNVVSSSFVEKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVDEEAILQSLPADLRRDIQCHLCLDLVRRVPFFSQMDDQLLDAICERLISSLSTEGTYIVREGDPVTEMLFVIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALHPKSTTNLPSSTRTVRALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMRESFILSEEVASETGQGGGEQFCVVSNPSQTKMNLDVTLLASRFAANARRGAQKMKDDMPKLQKPDEPDFSIEPDR 1215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2075897 2085350 - CmoCh11G004220.1 Cmo11g00422 391041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00422 1215 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Cmo11g00422 1215 CDD RING-H2_PA-TM-RING 128 171 - -
Cmo11g00422 1215 PRINTS EAG/ELK/ERG potassium channel family signature 639 648 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00422 1215 PRINTS EAG/ELK/ERG potassium channel family signature 756 766 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00422 1215 PRINTS EAG/ELK/ERG potassium channel family signature 847 864 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00422 1215 PRINTS EAG/ELK/ERG potassium channel family signature 891 900 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00422 1215 PRINTS EAG/ELK/ERG potassium channel family signature 941 948 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00422 1215 PRINTS EAG/ELK/ERG potassium channel family signature 873 884 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00422 1215 Gene3D - 610 903 - -
Cmo11g00422 1215 MobiDBLite consensus disorder prediction 1189 1215 - -
Cmo11g00422 1215 Pfam Cyclic nucleotide-binding domain 1001 1089 IPR000595 -
Cmo11g00422 1215 ProSiteProfiles cAMP/cGMP binding motif profile. 978 1062 IPR000595 -
Cmo11g00422 1215 SUPERFAMILY Voltage-gated potassium channels 577 900 - -
Cmo11g00422 1215 MobiDBLite consensus disorder prediction 199 225 - -
Cmo11g00422 1215 Pfam Ring finger domain 128 171 IPR001841 -
Cmo11g00422 1215 Gene3D Jelly Rolls 976 1096 IPR014710 -
Cmo11g00422 1215 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 537 1212 - -
Cmo11g00422 1215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 176 IPR013083 -
Cmo11g00422 1215 SUPERFAMILY cAMP-binding domain-like 908 1100 IPR018490 -
Cmo11g00422 1215 SMART cnmp_10 978 1109 IPR000595 -
Cmo11g00422 1215 MobiDBLite consensus disorder prediction 199 222 - -
Cmo11g00422 1215 Coils Coil 400 420 - -
Cmo11g00422 1215 Gene3D Helix hairpin bin 906 969 - -
Cmo11g00422 1215 SUPERFAMILY RING/U-box 109 177 - -
Cmo11g00422 1215 SMART ring_2 129 170 IPR001841 -
Cmo11g00422 1215 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 537 1212 - -
Cmo11g00422 1215 CDD CAP_ED 978 1109 IPR000595 -
Cmo11g00422 1215 Pfam Ion transport protein 581 905 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01233 Cmo-Chr3:9516122 Cmo11g00422 Cmo-Chr11:2075897 0 dispersed
Cmo04g02850 Cmo-Chr4:20340908 Cmo11g00422 Cmo-Chr11:2075897 1.31E-61 dispersed
Cmo05g01050 Cmo-Chr5:8475255 Cmo11g00422 Cmo-Chr11:2075897 0 dispersed
Cmo09g00565 Cmo-Chr9:2746010 Cmo11g00422 Cmo-Chr11:2075897 2.85E-24 dispersed
Cmo10g00139 Cmo-Chr10:641446 Cmo11g00422 Cmo-Chr11:2075897 0 dispersed
Cmo10g00460 Cmo-Chr10:2069185 Cmo11g00422 Cmo-Chr11:2075897 0 dispersed
Cmo11g00422 Cmo-Chr11:2075897 Cmo14g00651 Cmo-Chr14:3272989 0 dispersed
Cmo12g01007 Cmo-Chr12:9434614 Cmo11g00422 Cmo-Chr11:2075897 2.03E-97 dispersed
Cmo15g00336 Cmo-Chr15:1555920 Cmo11g00422 Cmo-Chr11:2075897 2.95E-61 dispersed
Cmo01g01626 Cmo-Chr1:12370950 Cmo11g00422 Cmo-Chr11:2075897 0 transposed
Cmo10g00459 Cmo-Chr10:2062469 Cmo11g00422 Cmo-Chr11:2075897 0 wgd
Cmo11g00422 Cmo-Chr11:2075897 Cmo12g00862 Cmo-Chr12:7836426 0 wgd
Cmo11g00422 Cmo-Chr11:2075897 Cmo05g00697 Cmo-Chr5:3574750 5.33E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00422 K05391 - csv:101218643 1393.64