Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00448 ATGGATGTATGCGAATCGGCGCGGGCATTTAGAAAGCATACAGTAGCTGCGGCGCCAAGACAACCGTTGGTTCCTGCAGAAAAGAACAATGAAGTTATCACACGGTTTCCCTCGTGTTCCAAGAAAATGTCATCTTCTCCTTCATCCTTGTCTGGTCCTCGGCGTTGCCCATCACCAAGCATCACGCGGACGGTTCATACATCCTCCCAATTGGTTCTTAAAAGAGCTCAATCAGCAGAGAGGAAGCGACCGTCCACACCCCCTTCTCCAAGCCCGGCCGCACCGATTGATGGTTCACCAGCAGATTTACAGTTGCTATCGAAAAGAATGATTAGTGGTCGACCTGATAGCTTATGGCCCTCTACGATGAGAAGTTTGAGCGTCTCATTCCAATCTGATACAATTTCTATTCCTGTTAGTAAGAAGGGAAAACCCGTGTTATCATCTCCTTCTGATCGAACTCTTAGGCCTTCTTCCAATTTTCCTTCTAAGCAGGCCGAGACGCAAACTGTTGCAAGGAAGTCCGCGCCAGAAAGAAAGAGGAGTCCACTTAGAGGTAAAAATGGACACGATCAATCAGAGAATTTCAAACCAGTTGCTGGGTCACGTACCCAATTCATAGATCAGCATAGATGGCCTAGTCGAATTGGTGCGAAAGCATCCTCCAATTCATTAAATTGTTGCGTGGATCTCGCCGATAAAAGAGTCCCAATCTTAAATAAGCCACTTAGAGGAAGCGCATTATCTTGTACGGTCGAGACTGTTAGCAAACCTTTACAGAAATCGTCCAGTGGTGTTATGAGGCTATCATATGTTGATGGAAGGAGTAGAAAAGAATTTGAGGCAAATTCAGCCAATGACAATTCAATGCAGGAATCTGCAGCTAACAAGGTTGTTTCGTCAAGTTTATCAGACATAAAAATAACAACAAACCGAGTTGTGAGATATGACTCGCCTACTCTTGTCCCACGTCCATCCTCTGTTACTAGAAGAGCTAGTCCATCTCGAATGACACCATCAACTCCAACTCCTCGAGCAATTAGCTCATCACGAATCAGACCTTCAAATGCTACTCAACCCAATGTTTCAACTTCTGTTCTTAGTTTCATAGCAGATTTTAAGAAGGGAAAGAAGGCTACAAGCTATATAGAAGGTGCTCATCAGCTACGGCTTCTATACAATAGACATTTGCAATGGAGATGTGCTAATGCCCGCGCAGAGGCTGTTCTGCGTAATCAGGAGGTGGCGGCAGAGATGAGCTACCTCAACGAATGGGCAGTGCTTGAAAGAAGTCATAATCGATCCTTATCAGGTGTTATAGACGATTTGGAGTCGAGCACTCTTCGTGTTCCATTGACTGGAGGAGCAAAAGTAGATGCGGGCTCTTTAAATGATGCTATTTTTTCAGCCGTTGAGGTGATGCAAGCAATGGGATCCTCCATTTGCTCCATGCTCCCAAGGGTGGAGATAATGCAGACGTTGGTTATTGAACTTGCAATTTTAGCAGCCCAAGAAAAGGCTATGCTTGATGAATGTATAGCATTGTTGGCATCAACAGCAGCTTTGCAGGCTAAGCAAGCTAACAACAAAGCCCATTTTGTTACCTCACTGAAAGATGAGTCATTCTTCCAAATCAGTCTTCCCCCGCATCAAATCAACACAGTCTTCGACATCAACGTCAACGCCATTCTGAACGTAATGGCCGAGGCCAAGTGCAGGGGTGAAGAACTCTGTGTGGAACCAGTTGGCGGAGCCATGGAAGCCAGCGCAGGACTTGTCGCTGGTTCTCATAACCGCAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCGAAGCCATTGAAGAACTTGGATGGTCAAGTTTGTGAGATATGTGGCGACGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCAGTCTGCAGACCTTGTTATGATCATATGGCAGAAGCTATGCTTCATGGAAAGATGAGCTACGGTAGAGGGCCAAATGATGATGAAAATGCACAGTATGGAAGAACAGAGCCAGAAAATGTTGAGCTTCCTTTATCATCCCAGGGTTATGGAGATCAGATATCATCTTCTTCACTGCACAAACGAGTGCATCCATTTCCAGCTTCTGAACCAGGCAGTGGAAGATGGGATGAAAAGAGAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATGATTGATGCAGCTAGACAGCCACTATCAAGGAAGGTACCAATAGCATCTAGCAAAATTAATCCTTACCGAATGGTTATTGTGGCTCGGCTCGTTATTCTTGCCTTCTTCCTTCGGTATCGGATTCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCGTGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTGTCCCTCAGGTATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCAGTGGACATTTTTGTCAGTACTGTTGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGATAAGGTTTCATGCTACGTTTCAGATGATGGAGCTTCCATGCTTACCTTCGAAGCAATGTCTGAAACTGCAGAATTTGCCAGGAAATGGGTGCCCTTCTGTAAGAAGTTTTCGATAGAACCTCGAGCACCTGAAATGTACTTTTGTGAGAAGATCGATTATCTCAAGGATAAAGTCCAACCAACGTTTGTAAAGGAGCGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATGCCCAAGTAGCAAAAGCCATAAAAGTTCCCACAGAAGGATGGATAATGCAAGATGGAACACCATGGCCAGGCAACAACACAAAAGATCACCCTGGTATGATCCAAGTCTTTCTGGGTCACAGTGGAGGCCTTGATGCAGAAGGGAATGAACTCCCCCGCTTAGTGTACGTATCTCGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAGGCTGGTGCCATGAATGCCTTGATTCGTGTATCTGCAGTGCTTACAAACGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCAAGAGAGGCAATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTACAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAATACAGTCTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGACCTGTCTATGTCGGAACAGGGTGTGTCTTCAGGAGACAGGCTTTATATGGTTATGAACCCCCAAAAGGACCGAAGCGCCCAAAAATGGTATGCTGTGACTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTTAAGAGCTCTAAAAGTGGGGTAGATGGAGATGCTGCAGCGATGGAAGATAACAAGGAGCTGCTAATGTCGCAAATGAATTTCGAAAAGAAATTTGGGCAGTCATCAATTTTTGTTACCTCGACTTTGATGGAAGAAGGTGGTGTTCCACCCTCCTCGGGTCCAGCGGCCCTACTTAAGGAAGCAATTCATGTTATCAGTTGCGGTTATGAAGACAAAACCGAATGGGGTACAGAGTTGGGCTGGATTTATGGGTCGATCACAGAAGATATTCTAACAGGTTTCAAGATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATTAACTTGTCTGACCGGCTGAACCAGGTGCTTCGTTGGGCACTCGGGTCTATTGAAATCTTTTTCAGCAATCACTGCCCTGTTTGGTATGGTTATAAGGGTGGGAAGCTAAAGTGGCTAGAGAGATTTGCATACGTCAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCTTACTGTACCCTCCCTGCGATCTGCCTGCTCACCGATAAGTTTATCATGCCACCGATAAGCACTTTTGCAAGTCTCTACTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGTATTCTAGAGCTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTTCAAGGTCTATTGAAGGTTCTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGATTTTGGAGAATTATATGCCTTTAAGTGGACCACTCTACTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTTGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAATGGCTATCAATCATGGGGACCCCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTCCATCTCTACCCATTCCTTAAGGGTCTGATGGGCCGACAAAACCGCACACCGACTATAGTCGTCATATGGTCCGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTTCGAATTGATCCATTTGTGATGAAAACAAAGGGACCAGATACCAAGCAATGTGGACTAAATTGCTGA 4698 44.85 MDVCESARAFRKHTVAAAPRQPLVPAEKNNEVITRFPSCSKKMSSSPSSLSGPRRCPSPSITRTVHTSSQLVLKRAQSAERKRPSTPPSPSPAAPIDGSPADLQLLSKRMISGRPDSLWPSTMRSLSVSFQSDTISIPVSKKGKPVLSSPSDRTLRPSSNFPSKQAETQTVARKSAPERKRSPLRGKNGHDQSENFKPVAGSRTQFIDQHRWPSRIGAKASSNSLNCCVDLADKRVPILNKPLRGSALSCTVETVSKPLQKSSSGVMRLSYVDGRSRKEFEANSANDNSMQESAANKVVSSSLSDIKITTNRVVRYDSPTLVPRPSSVTRRASPSRMTPSTPTPRAISSSRIRPSNATQPNVSTSVLSFIADFKKGKKATSYIEGAHQLRLLYNRHLQWRCANARAEAVLRNQEVAAEMSYLNEWAVLERSHNRSLSGVIDDLESSTLRVPLTGGAKVDAGSLNDAIFSAVEVMQAMGSSICSMLPRVEIMQTLVIELAILAAQEKAMLDECIALLASTAALQAKQANNKAHFVTSLKDESFFQISLPPHQINTVFDINVNAILNVMAEAKCRGEELCVEPVGGAMEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYDHMAEAMLHGKMSYGRGPNDDENAQYGRTEPENVELPLSSQGYGDQISSSSLHKRVHPFPASEPGSGRWDEKREEGWKDRMDDWKLQQGNLGPEPDDANDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKVSCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAIKVPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVCCDCCPCFGRRKKLKSSKSGVDGDAAAMEDNKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSGPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLYFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKQCGLNC 1565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2188522 2198452 + CmoCh11G004480.1 Cmo11g00448 391067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00448 1565 MobiDBLite consensus disorder prediction 140 200 - -
Cmo11g00448 1565 MobiDBLite consensus disorder prediction 35 75 - -
Cmo11g00448 1565 MobiDBLite consensus disorder prediction 173 192 - -
Cmo11g00448 1565 Pfam Cellulose synthase 860 1559 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo11g00448 1565 Pfam QWRF family 257 419 IPR007573 -
Cmo11g00448 1565 Pfam QWRF family 418 510 IPR007573 -
Cmo11g00448 1565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 663 IPR013083 -
Cmo11g00448 1565 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 710 1565 - -
Cmo11g00448 1565 MobiDBLite consensus disorder prediction 151 172 - -
Cmo11g00448 1565 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 586 655 - -
Cmo11g00448 1565 MobiDBLite consensus disorder prediction 35 100 - -
Cmo11g00448 1565 SUPERFAMILY Nucleotide-diphospho-sugar transferases 873 1389 IPR029044 -
Cmo11g00448 1565 Pfam Zinc-binding RING-finger 612 655 IPR027934 -
Cmo11g00448 1565 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 969 1151 IPR029044 -
Cmo11g00448 1565 SUPERFAMILY RING/U-box 606 655 - -
Cmo11g00448 1565 MobiDBLite consensus disorder prediction 700 727 - -
Cmo11g00448 1565 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 710 1565 - -
Cmo11g00448 1565 MobiDBLite consensus disorder prediction 319 359 - -
Cmo11g00448 1565 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 586 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00448 Cmo-Chr11:2188522 Cmo17g01333 Cmo-Chr17:10447348 0 dispersed
Cmo18g00405 Cmo-Chr18:2623298 Cmo11g00448 Cmo-Chr11:2188522 0 dispersed
Cmo19g00571 Cmo-Chr19:6527967 Cmo11g00448 Cmo-Chr11:2188522 4.29E-08 dispersed
Cmo20g00637 Cmo-Chr20:3127970 Cmo11g00448 Cmo-Chr11:2188522 4.07E-130 dispersed
Cmo20g00943 Cmo-Chr20:4924526 Cmo11g00448 Cmo-Chr11:2188522 0 dispersed
Cmo10g00491 Cmo-Chr10:2193786 Cmo11g00448 Cmo-Chr11:2188522 0 transposed
Cmo10g00489 Cmo-Chr10:2185055 Cmo11g00448 Cmo-Chr11:2188522 0 wgd
Cmo11g00448 Cmo-Chr11:2188522 Cmo12g00853 Cmo-Chr12:7788536 4.31E-132 wgd
Cmo11g00448 Cmo-Chr11:2188522 Cmo12g00853 Cmo-Chr12:7788536 4.31E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00448 K10999 - csv:101214842 1945.24