Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00459 ATGGCGGAGCCGGAAGGGTTTGATTCTAATCAACTCGGAAGCTCGAAGGCTTCTGCAGAGCAACAGGATGACGAGGAAGAAGAAATGGAAGATTCAGAGAATGAATCAGAGGTGGAGTTGGAGGAACATAAACTGAGTGAGTTGAGGACAGGTTCGTTGGTTAGTGAAGCTGCAGTGAAGGGGTCTTGCTCTCAAACCCTAGCGCCGCCTTCTGCGAATCAGTCCTCGGAGAACGGTCGGTCTGATGGCTTGCCTAACAATTCTGCTGCCGAGTCACTCGAAGGAGTTGAATTGAAGCATCAAGCTCCATCTGCCAGCAATGTTGAAGCAATCCAGACAGATCAGGTACAAGAACAAAGCCAACTTCAGATAATAGTATATAAAGGACCTGATTCAGAACAATCACCAACTTCAGTTACTCAGTCTATCTCATCCTCTGCTAGTCCAAGTTTATCCGAATATAAACTGGTACCTAAGAAGGTCCATGAAGAATGTAAGCCAGAACCAAGCCAGAAAAATTCTTCCGACCGTAAAACTGTGTTCTCTGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGGAAATATGGTCAGAAGCAAGTGAAGATTCCAAAGGGTTCACGGAGCTATTACAAGTGTACATATTCTGGATGCTGTGCTAAGAAGATTGAATGTTGTGATCACTCTGGCCTTGTAACAGAGGTTGTTTACAAGAGCCAACATAGCCATGATCCTCCTAGGAAGATTAGCAACCCCAAGGAAAGTATGCTTGTGCCTTATGTTGAGCCTGTGGTTAAAAAAATCATGGCTGAACATTCCGTAAGAATAATTAACGATTCAGATCCTCCTATGTCTTCAAAAGAACCGTTACGGGAAACAGCTTCAGTCGTTGAAAGAAAACGACAGTTCTCTAATGACTCTGACGGAAATGATGAATCTAAAATCAAGAATGAGAATGACAACGAATACGAAACAAAACAAAAAGTTAAGAAGAGCAGTGGGGGATATTCAGGCACTCCCCTAAAACCTGGAAAGAAGCCCAAGTTTGTGGTACATGCAGCGGGTGATGTGGGAATCTCAGGTGACGGATACAGATGGCGTAAGTATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTACTACCGATGTACCTCTGCTGGGTGTCCAGTCCGTAAGCATATCGAATCAGCTGTAGAAAATCCAAGCGTAGTGATTATAACATACAAGGGAGTTCATGATCACGACATGCCAGTACCGAAGAAACGACACGGTCCACCTAGTGCGCCTCTTGTAGCTGCTGCAGCTCCTGCCTCCATGGGCAATATGCAACCAAAGAAAACAGACGCAGTTCAGAGCCAAATTTCTTCAACACAATGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGATCTTGGAGGTGAGAAAGCAATGGAATCTGCCCGAACACTTTTGAGCATTGGATTTGAAATCAAGCCTTGCTGA 1509 44.8 MAEPEGFDSNQLGSSKASAEQQDDEEEEMEDSENESEVELEEHKLSELRTGSLVSEAAVKGSCSQTLAPPSANQSSENGRSDGLPNNSAAESLEGVELKHQAPSASNVEAIQTDQVQEQSQLQIIVYKGPDSEQSPTSVTQSISSSASPSLSEYKLVPKKVHEECKPEPSQKNSSDRKTVFSVPNVRTPASDGYNWRKYGQKQVKIPKGSRSYYKCTYSGCCAKKIECCDHSGLVTEVVYKSQHSHDPPRKISNPKESMLVPYVEPVVKKIMAEHSVRIINDSDPPMSSKEPLRETASVVERKRQFSNDSDGNDESKIKNENDNEYETKQKVKKSSGGYSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPSVVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMGNMQPKKTDAVQSQISSTQWSVDAEGELTGEALDLGGEKAMESARTLLSIGFEIKPC 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2239194 2244786 - CmoCh11G004590.1 Cmo11g00459 391078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00459 502 MobiDBLite consensus disorder prediction 295 332 - -
Cmo11g00459 502 SUPERFAMILY WRKY DNA-binding domain 359 423 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g00459 502 MobiDBLite consensus disorder prediction 105 152 - -
Cmo11g00459 502 ProSiteProfiles WRKY domain profile. 191 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g00459 502 SUPERFAMILY WRKY DNA-binding domain 188 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g00459 502 Coils Coil 15 42 - -
Cmo11g00459 502 Gene3D WRKY domain 175 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g00459 502 Gene3D WRKY domain 348 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g00459 502 MobiDBLite consensus disorder prediction 156 173 - -
Cmo11g00459 502 SMART WRKY_cls 190 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g00459 502 SMART WRKY_cls 363 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g00459 502 ProSiteProfiles WRKY domain profile. 358 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g00459 502 MobiDBLite consensus disorder prediction 1 186 - -
Cmo11g00459 502 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 500 IPR044810 GO:0003700
Cmo11g00459 502 MobiDBLite consensus disorder prediction 280 350 - -
Cmo11g00459 502 MobiDBLite consensus disorder prediction 21 37 - -
Cmo11g00459 502 MobiDBLite consensus disorder prediction 57 88 - -
Cmo11g00459 502 Pfam WRKY DNA -binding domain 365 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g00459 502 Pfam WRKY DNA -binding domain 192 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g00459 502 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 19 500 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00500 Cmo11g00459 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00459 Cmo-Chr11:2239194 Cmo14g00029 Cmo-Chr14:153073 1.00E-16 dispersed
Cmo10g00500 Cmo-Chr10:2229196 Cmo11g00459 Cmo-Chr11:2239194 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10552 PF03106 WRKY 3.70E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00459 - - bhj:120071353 763.837