Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00460 ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGTACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTGTTGAAGTTTCCACTTCAAAAACTGGAAAGCATGGACATGCGAAGTGTCACTTTGTGGCAATTGACATATTCAATGGAAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGTACTGATTATCAGCTGATTGATATATCTGAGGATGGTTTTGTCAGTCTGCTTACTGAAAATGGAAACACTAAGGATGACCTGAGGCTTCCGACCGATGATAATCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGAAAGGATCTTGTTCTAACTGTTATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAAAGGCTAA 483 45.13 MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2245677 2248890 - CmoCh11G004600.1 Cmo11g00460 391079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00460 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cmo11g00460 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo11g00460 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cmo11g00460 160 CDD S1_eIF5A 86 156 - -
Cmo11g00460 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo11g00460 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo11g00460 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo11g00460 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo11g00460 160 Gene3D - 1 85 IPR014722 -
Cmo11g00460 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Cmo11g00460 160 Gene3D - 86 159 IPR012340 -
Cmo11g00460 160 MobiDBLite consensus disorder prediction 1 21 - -
Cmo11g00460 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00460 Cmo-Chr11:2245677 Cmo18g01144 Cmo-Chr18:11697801 2.49E-109 dispersed
Cmo10g00501 Cmo-Chr10:2234753 Cmo11g00460 Cmo-Chr11:2245677 1.49E-77 wgd
Cmo11g00460 Cmo-Chr11:2245677 Cmo09g00416 Cmo-Chr9:1817752 1.29E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00460 K03263 - csv:101210204 325.479