Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00466 | ATGGCGGAAAAGGACAGAGACGGTCAGTCTGGTGTTCTCCATGGAAAGTATGAACTAGGTCGGCTTCTAGGGCATGGTACTTTTGCGAAGGTTTATCATGCCCGGAATTTGAAGACGGGGACGAACATGGCGATGAAGGTGGTTGGGAAGGAGAAAGTGATAAAAGTAGGCATGATGGAGCAGATCAAGAGGGAGATCTCTGTAATGAAGATGGTGAAGCATCCGAATATCGTCGAGCTTCATGAGGTTATGGCGAGCAAATCCAAGATCTATTTCGCGATGGAGCTTGTTCGCGGAGGGGAACTGTTCTCCAAAATTTCCAGAGGTCGATTGAGAGAAGATTTGGCTAGACTTTACTTTCAGCAGCTGATTTCTGCGATCGATTTTTGCCACAGCCGTGGAGTTTATCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCAGAGCATCTGAAACAGGATGGACTGTTGCACACAACTTGTGGCACGCCGGCGTATGTTGCGCCGGAAGTAATTGGGAAGAAGGGATACAACGGCGCCAAAGCTGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTTCTCGCCGGATTTCTCCCATTTCAAGACGACAATATTGTGTCGATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGCCCGCCGTGGTTCTCACCGGAAGCCCGTCGATTAATAACCAAACTCCTGGATCCGAATCCGAGCAGCAGAATTACAACATCAAAGATCATGGAGTCCTCCTGGTTCAGGAAATCCACGCCGAGGACTGTAATAACAAAAGAGGAGCAGGAATTCGACGAGAGCAAGGAGAAATTGAAGCAATCGGAGACGTTAAATGCCTTCCATATAATTTCCTTATCGGAAGGGTTCGATTTATCACCGTTGTTCGAGGAGAAAAAGAGAGAAGAGAAAGAGGAGCTGAGATTTGCGACGACAAGGCCCGCAAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAGGCGGGGAAATTCAGCGTAAAAAAGAGCGAATCAAGAGTGAGATTACAGGGTGAAGCGTGCGGAAGAAAAGGGAAACTAGCGGTGGCGGCGGAGATCTTCGCCGTAACGCCGTCGTTTCTGGTGGTAGAGGTGAAGAAAGATCACGGGGACACGTTAGAATACAGGCAGTTCTGCAGCAAAGAGCTCCGGCCGGCGCTGAAAGACATTGTGTGGACATCACCAACGGAGAAGACAGTGTCGGGTTGA | 1293 | 48.8 | MAEKDRDGQSGVLHGKYELGRLLGHGTFAKVYHARNLKTGTNMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISRGRLREDLARLYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSPEARRLITKLLDPNPSSRITTSKIMESSWFRKSTPRTVITKEEQEFDESKEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGEACGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYRQFCSKELRPALKDIVWTSPTEKTVSG | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2282701 | 2283993 | + | CmoCh11G004660.1 | Cmo11g00466 | 391085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00466 | 430 | ProSitePatterns | Protein kinases ATP-binding region signature. | 23 | 50 | IPR017441 | GO:0005524 | |
Cmo11g00466 | 430 | PANTHER | - | 8 | 426 | - | - | |
Cmo11g00466 | 430 | Gene3D | Kinase associated domain 1, KA1 | 299 | 421 | - | - | |
Cmo11g00466 | 430 | ProSiteProfiles | Protein kinase domain profile. | 17 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g00466 | 430 | CDD | STKc_SnRK3 | 16 | 270 | - | - | |
Cmo11g00466 | 430 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 285 | IPR011009 | - | |
Cmo11g00466 | 430 | Gene3D | Phosphorylase Kinase; domain 1 | 14 | 98 | - | - | |
Cmo11g00466 | 430 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 8 | 426 | - | - | |
Cmo11g00466 | 430 | ProSiteProfiles | NAF domain profile. | 295 | 319 | IPR018451 | GO:0007165 | |
Cmo11g00466 | 430 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 135 | 147 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo11g00466 | 430 | SMART | serkin_6 | 17 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g00466 | 430 | Pfam | NAF domain | 298 | 357 | IPR004041 | GO:0007165 | |
Cmo11g00466 | 430 | Gene3D | Transferase(Phosphotransferase) domain 1 | 99 | 298 | - | - | |
Cmo11g00466 | 430 | CDD | CIPK_C | 301 | 416 | - | - | |
Cmo11g00466 | 430 | Pfam | Protein kinase domain | 17 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g00466 | 430 | Coils | Coil | 280 | 300 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00466 | Cmo-Chr11:2282701 | Cmo12g01173 | Cmo-Chr12:10616139 | 0 | dispersed | |
Cmo10g00509 | Cmo-Chr10:2286667 | Cmo11g00466 | Cmo-Chr11:2282701 | 0 | wgd | |
Cmo11g00466 | Cmo-Chr11:2282701 | Cmo09g00419 | Cmo-Chr9:1843227 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74655 | PF00069 | Pkinase | 2.30E-73 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00466 | - | K07198 | csv:101211847 | 808.905 |