Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00466 ATGGCGGAAAAGGACAGAGACGGTCAGTCTGGTGTTCTCCATGGAAAGTATGAACTAGGTCGGCTTCTAGGGCATGGTACTTTTGCGAAGGTTTATCATGCCCGGAATTTGAAGACGGGGACGAACATGGCGATGAAGGTGGTTGGGAAGGAGAAAGTGATAAAAGTAGGCATGATGGAGCAGATCAAGAGGGAGATCTCTGTAATGAAGATGGTGAAGCATCCGAATATCGTCGAGCTTCATGAGGTTATGGCGAGCAAATCCAAGATCTATTTCGCGATGGAGCTTGTTCGCGGAGGGGAACTGTTCTCCAAAATTTCCAGAGGTCGATTGAGAGAAGATTTGGCTAGACTTTACTTTCAGCAGCTGATTTCTGCGATCGATTTTTGCCACAGCCGTGGAGTTTATCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCAGAGCATCTGAAACAGGATGGACTGTTGCACACAACTTGTGGCACGCCGGCGTATGTTGCGCCGGAAGTAATTGGGAAGAAGGGATACAACGGCGCCAAAGCTGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTTCTCGCCGGATTTCTCCCATTTCAAGACGACAATATTGTGTCGATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGCCCGCCGTGGTTCTCACCGGAAGCCCGTCGATTAATAACCAAACTCCTGGATCCGAATCCGAGCAGCAGAATTACAACATCAAAGATCATGGAGTCCTCCTGGTTCAGGAAATCCACGCCGAGGACTGTAATAACAAAAGAGGAGCAGGAATTCGACGAGAGCAAGGAGAAATTGAAGCAATCGGAGACGTTAAATGCCTTCCATATAATTTCCTTATCGGAAGGGTTCGATTTATCACCGTTGTTCGAGGAGAAAAAGAGAGAAGAGAAAGAGGAGCTGAGATTTGCGACGACAAGGCCCGCAAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAGGCGGGGAAATTCAGCGTAAAAAAGAGCGAATCAAGAGTGAGATTACAGGGTGAAGCGTGCGGAAGAAAAGGGAAACTAGCGGTGGCGGCGGAGATCTTCGCCGTAACGCCGTCGTTTCTGGTGGTAGAGGTGAAGAAAGATCACGGGGACACGTTAGAATACAGGCAGTTCTGCAGCAAAGAGCTCCGGCCGGCGCTGAAAGACATTGTGTGGACATCACCAACGGAGAAGACAGTGTCGGGTTGA 1293 48.8 MAEKDRDGQSGVLHGKYELGRLLGHGTFAKVYHARNLKTGTNMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISRGRLREDLARLYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSPEARRLITKLLDPNPSSRITTSKIMESSWFRKSTPRTVITKEEQEFDESKEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGEACGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYRQFCSKELRPALKDIVWTSPTEKTVSG 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2282701 2283993 + CmoCh11G004660.1 Cmo11g00466 391085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00466 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Cmo11g00466 430 PANTHER - 8 426 - -
Cmo11g00466 430 Gene3D Kinase associated domain 1, KA1 299 421 - -
Cmo11g00466 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00466 430 CDD STKc_SnRK3 16 270 - -
Cmo11g00466 430 SUPERFAMILY Protein kinase-like (PK-like) 13 285 IPR011009 -
Cmo11g00466 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cmo11g00466 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 426 - -
Cmo11g00466 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Cmo11g00466 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cmo11g00466 430 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00466 430 Pfam NAF domain 298 357 IPR004041 GO:0007165
Cmo11g00466 430 Gene3D Transferase(Phosphotransferase) domain 1 99 298 - -
Cmo11g00466 430 CDD CIPK_C 301 416 - -
Cmo11g00466 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00466 430 Coils Coil 280 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00466 Cmo-Chr11:2282701 Cmo12g01173 Cmo-Chr12:10616139 0 dispersed
Cmo10g00509 Cmo-Chr10:2286667 Cmo11g00466 Cmo-Chr11:2282701 0 wgd
Cmo11g00466 Cmo-Chr11:2282701 Cmo09g00419 Cmo-Chr9:1843227 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74655 PF00069 Pkinase 2.30E-73 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00466 - K07198 csv:101211847 808.905