Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00467 | ATGAAACAGAAGTGGCCAAATACGATTTCAGAAACCAGGGTGAATGCAATTGCAGAAGGTTCAGATTCAAGCTGCATCACTTGCCCATTCCCTGCAAATGGGTGCAGTAAGCAAGGAAGGAGTTTAACCTCAAAATTCAAGGGTGTTGTGCCTCAACAGAACGGCCACTGGGGTGCTCAAATTTACGCCAATCATCAGCGTATTTGGCTTGGGACATTCAAGTCAGAAAACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAAGTCACAATTGAAGAGCCAAACTTTCAGACACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACACAACCAAATTTGCTGAGTATTTGAGGGACCGTTCTGAAAGTGCACAAACATCAGCCGGCCCCTCTGCAGCAAATATAAATAACAATGAAGGGACTATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTGGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTTCCTCACGTATCAGCTAGCACATTAGAAAACGTAGAATGTGCCGATGACGATCGTGATGTGCAGCTGATGTTTTTTGACAAAACAATGAGACAATGGAAATTTCGTTACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTCACACGTGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGACAAATGATGCTAAAACTACATTCTGTGTGGTAGATGTTAAAAATCGTAATGGTGCCAGCTCGGTCGAGAATGAAGCCGAAGAATTGTTATCGCCCAAGAACAAGGACGATGGACTAAAAGGTGATGCTGAAGTTGAGGGTTTCAAATTGTTTGGAGTGCATATTAAGTGA | 972 | 41.77 | MKQKWPNTISETRVNAIAEGSDSSCITCPFPANGCSKQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQTLYTTEALLNMLKDGSYTTKFAEYLRDRSESAQTSAGPSAANINNNEGTIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHVSASTLENVECADDDRDVQLMFFDKTMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKTNDAKTTFCVVDVKNRNGASSVENEAEELLSPKNKDDGLKGDAEVEGFKLFGVHIK | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2286432 | 2287403 | - | CmoCh11G004670.1 | Cmo11g00467 | 391086 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00467 | 323 | Gene3D | AP2/ERF domain | 44 | 101 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo11g00467 | 323 | ProSiteProfiles | B3 DNA-binding domain profile. | 166 | 281 | IPR003340 | GO:0003677 | |
Cmo11g00467 | 323 | SMART | rav1_2 | 45 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00467 | 323 | PANTHER | DNA-BINDING PROTEIN RAV1 | 1 | 293 | - | - | |
Cmo11g00467 | 323 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 1 | 293 | IPR044800 | GO:0003700 | |
Cmo11g00467 | 323 | Pfam | AP2 domain | 44 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00467 | 323 | ProSiteProfiles | AP2/ERF domain profile. | 45 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00467 | 323 | SUPERFAMILY | DNA-binding domain | 44 | 101 | IPR016177 | GO:0003677 | |
Cmo11g00467 | 323 | CDD | AP2 | 44 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00467 | 323 | SMART | B3_2 | 166 | 281 | IPR003340 | GO:0003677 | |
Cmo11g00467 | 323 | Pfam | B3 DNA binding domain | 166 | 267 | IPR003340 | GO:0003677 | |
Cmo11g00467 | 323 | CDD | B3_DNA | 165 | 277 | IPR003340 | GO:0003677 | |
Cmo11g00467 | 323 | SUPERFAMILY | DNA-binding pseudobarrel domain | 165 | 265 | IPR015300 | - | |
Cmo11g00467 | 323 | Gene3D | - | 161 | 293 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00467 | Cmo-Chr11:2286432 | Cmo11g00834 | Cmo-Chr11:4237476 | 7.17E-103 | dispersed | |
Cmo10g00510 | Cmo-Chr10:2288074 | Cmo11g00467 | Cmo-Chr11:2286432 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10553 | PF02362 | B3 | 5.60E-25 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00467 | K09287 | - | csv:101212246 | 543.502 |