Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00467 ATGAAACAGAAGTGGCCAAATACGATTTCAGAAACCAGGGTGAATGCAATTGCAGAAGGTTCAGATTCAAGCTGCATCACTTGCCCATTCCCTGCAAATGGGTGCAGTAAGCAAGGAAGGAGTTTAACCTCAAAATTCAAGGGTGTTGTGCCTCAACAGAACGGCCACTGGGGTGCTCAAATTTACGCCAATCATCAGCGTATTTGGCTTGGGACATTCAAGTCAGAAAACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAAGTCACAATTGAAGAGCCAAACTTTCAGACACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACACAACCAAATTTGCTGAGTATTTGAGGGACCGTTCTGAAAGTGCACAAACATCAGCCGGCCCCTCTGCAGCAAATATAAATAACAATGAAGGGACTATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTGGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTTCCTCACGTATCAGCTAGCACATTAGAAAACGTAGAATGTGCCGATGACGATCGTGATGTGCAGCTGATGTTTTTTGACAAAACAATGAGACAATGGAAATTTCGTTACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTCACACGTGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGACAAATGATGCTAAAACTACATTCTGTGTGGTAGATGTTAAAAATCGTAATGGTGCCAGCTCGGTCGAGAATGAAGCCGAAGAATTGTTATCGCCCAAGAACAAGGACGATGGACTAAAAGGTGATGCTGAAGTTGAGGGTTTCAAATTGTTTGGAGTGCATATTAAGTGA 972 41.77 MKQKWPNTISETRVNAIAEGSDSSCITCPFPANGCSKQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQTLYTTEALLNMLKDGSYTTKFAEYLRDRSESAQTSAGPSAANINNNEGTIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHVSASTLENVECADDDRDVQLMFFDKTMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKTNDAKTTFCVVDVKNRNGASSVENEAEELLSPKNKDDGLKGDAEVEGFKLFGVHIK 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2286432 2287403 - CmoCh11G004670.1 Cmo11g00467 391086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00467 323 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700|GO:0006355
Cmo11g00467 323 ProSiteProfiles B3 DNA-binding domain profile. 166 281 IPR003340 GO:0003677
Cmo11g00467 323 SMART rav1_2 45 106 IPR001471 GO:0003700|GO:0006355
Cmo11g00467 323 PANTHER DNA-BINDING PROTEIN RAV1 1 293 - -
Cmo11g00467 323 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 293 IPR044800 GO:0003700
Cmo11g00467 323 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Cmo11g00467 323 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700|GO:0006355
Cmo11g00467 323 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Cmo11g00467 323 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Cmo11g00467 323 SMART B3_2 166 281 IPR003340 GO:0003677
Cmo11g00467 323 Pfam B3 DNA binding domain 166 267 IPR003340 GO:0003677
Cmo11g00467 323 CDD B3_DNA 165 277 IPR003340 GO:0003677
Cmo11g00467 323 SUPERFAMILY DNA-binding pseudobarrel domain 165 265 IPR015300 -
Cmo11g00467 323 Gene3D - 161 293 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00467 Cmo-Chr11:2286432 Cmo11g00834 Cmo-Chr11:4237476 7.17E-103 dispersed
Cmo10g00510 Cmo-Chr10:2288074 Cmo11g00467 Cmo-Chr11:2286432 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10553 PF02362 B3 5.60E-25 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00467 K09287 - csv:101212246 543.502