Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00470 ATGCAGCCCTGTAGCAGAGAAATGGAAACCCTCAACTCTCTTTTAAACAACTCCCAAATCTCCCTTCAGGATCTCCATGGCGACGACCACCACCTGAATCCGCCGTCGGAGCAGATTCCGGGGTCTCAGCTCCACCATTTCGATCCGGTGGCTGCCGCCTCTCACGATGACTTCCTCGAGCAAATGCTTCATACAATCCCATCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCGTGGGACATTAACCCCATCAATAAGCCATCCAGAGATATCTCCGACACCTCTCCCGCTGCAAAGGCAGCCGTTATGCTCCAGCAACAGCTTCTATTGTCCAGAGGCATATCCTCTGTCGCCGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTAGTAATGCCGATTTGGACCGCTCCCACAACGACATCGTCGACAGATCCTGCTTCCGGCCACCAAACTCGGGAGGTGGTATTCAATCGCATAGTTTCGGAGCTCAAGGAAACATGATGAATCAAGCTCCGGACGGTGGGTCCGGCGGAATCTCTCCATCTCAGCCGAAGCAGAAAGTCAGAGCTCGCAGGGGGCAAGCTACAGACCCCCACAGTATCGCGGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTGGTTCCCAACGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTACAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTAGGGGGTGCAGCTGCTGTTGCTCCTCTTGGTGCTGACGTGTCCGCTGAGGCCAGCTCTCTCAAAGGTGGTGGTGAGTGTATGCAAGGTGGGCGGAGTTCAAACGGCAGCGGAGGAAACCAAACGGCGTCGTCGAACGACAGCGTGACGGTGACGGAGCAGCAGGTGGCGAGGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGACTCTGTCTTATGCCGATATCACTGGCAACGGCGATTTCGACGTCCACGTGTCCCTCGAGGAATCCGATTATCAACGGCAGCGGCGGGCACCACCCAATGATGGGATCAAACGGCGAAGGGCCGTCGTCGCCGAGCATGTCGGTGTTAACAGTGCAGTCGACGAGCATGGGAAACGGATCCGTCAAGGACGCGGCCTCCGATTGA 1203 55.2 MQPCSREMETLNSLLNNSQISLQDLHGDDHHLNPPSEQIPGSQLHHFDPVAAASHDDFLEQMLHTIPSCSWPDLNPSNPKSPWDINPINKPSRDISDTSPAAKAAVMLQQQLLLSRGISSVADHGLPPMPLSLSNADLDRSHNDIVDRSCFRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLGADVSAEASSLKGGGECMQGGRSSNGSGGNQTASSNDSVTVTEQQVARLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCPSRNPIINGSGGHHPMMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASD 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2301693 2305723 - CmoCh11G004700.1 Cmo11g00470 391089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00470 400 Pfam Helix-loop-helix DNA-binding domain 203 248 IPR011598 GO:0046983
Cmo11g00470 400 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 358 - -
Cmo11g00470 400 MobiDBLite consensus disorder prediction 371 400 - -
Cmo11g00470 400 SMART finulus 204 253 IPR011598 GO:0046983
Cmo11g00470 400 Gene3D - 193 255 IPR036638 GO:0046983
Cmo11g00470 400 MobiDBLite consensus disorder prediction 155 193 - -
Cmo11g00470 400 MobiDBLite consensus disorder prediction 24 43 - -
Cmo11g00470 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Cmo11g00470 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 258 IPR036638 GO:0046983
Cmo11g00470 400 MobiDBLite consensus disorder prediction 155 201 - -
Cmo11g00470 400 MobiDBLite consensus disorder prediction 280 309 - -
Cmo11g00470 400 PANTHER TRANSCRIPTION FACTOR BHLH69 46 358 - -
Cmo11g00470 400 MobiDBLite consensus disorder prediction 355 400 - -
Cmo11g00470 400 MobiDBLite consensus disorder prediction 288 309 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00470 Cmo12g01174 CCT
Cmo05g01263 Cmo11g00470 CCT
Cmo10g00511 Cmo11g00470 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00470 Cmo-Chr11:2301693 Cmo12g01174 Cmo-Chr12:10624309 2.36E-98 dispersed
Cmo15g00764 Cmo-Chr15:3751026 Cmo11g00470 Cmo-Chr11:2301693 4.83E-19 dispersed
Cmo16g00342 Cmo-Chr16:1580268 Cmo11g00470 Cmo-Chr11:2301693 1.60E-08 dispersed
Cmo11g01008 Cmo-Chr11:5422138 Cmo11g00470 Cmo-Chr11:2301693 1.40E-61 transposed
Cmo17g01190 Cmo-Chr17:9573292 Cmo11g00470 Cmo-Chr11:2301693 1.83E-60 transposed
Cmo10g00511 Cmo-Chr10:2307147 Cmo11g00470 Cmo-Chr11:2301693 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10554 PF00010 HLH 1.50E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00470 - - csv:101211609 634.024