Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00476 ATGACTGTGGAGGCTCATTCGGTTACTTCTGTCGGTGATGATGGTGCCACTGATCGTTTTCCTGTTGGGATGCGTGTTCTTGCTGTTGACGACGACCCTATTTGTCTCAAAGTGCTTGAAACTCTCCTCCGTAGATGCCAATACCATGTTACCACGACGAAGCAGTCCATTGAGGCTTTGAAAATGTTGAGAGAAAATAGAAACAATTTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTTCGCATGGGGCATGTGATTATCTGTTGAAACCGGTTCGAATCGAGGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGGAAGAAGCTCGAACCGAAGGCAAAGAACAAGTTCCCTAGTGAAGATAAGGCTCGAAATGGAGGCAGTGAAGGTGAACAAGGTTTCTCATCAACCAGTAATGCAGACAATGCGAAATTCAATAGGAAGCGGAAGGACCAAGACGACGATGACGATGAAGATGGAAAGGATAACGGGCTTGATAATGACGACCCCTCGAACCAGAAGAAGCCTAGAGTAGTGTGGTCGGTTGAGTTGCACAAGAAATTCGTCTCAGCGGTTAATCAGTTGGGTCTCGAAAAGGCTGTGCCTAAGAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAACGTAGCAAATTCAACCAGAAAACAAGATGGAGCTAAGAGCGTCTATGTTGTATTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAGCAAGCTAACATGGTTGCTACATTTGGGAGTAAAGACGGTGCGTTCATGGGGATGGGTTCACTCGATGGATATGGAGATTTACATGGCTTTGCAGGAATGGGACGGCTTCAAAACTCTTCGTTATCATCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGTCTGCGTGGAATCACCTCTTCTGGACTGATACAGCAAAACTCCAAAAATTTGAACTCCGCCATTAGTAACCTTGGGAAGCTCCAGCCAACTACTATGCTGCCTCCTAACCAACCTACTAATCTGTTGCAAGGAATTCCGACGTCGCTCGAGCTCAGCCAGCTGCAACACAGCAAGTCCACCATTCCTATTGGAGACTTCAATATAATAAATGAGACATCTGGGTTTGGAGTTCCCAACAGTTTCCCTGATAGTAGAGTGAATATTGGAAACTCAACCAATTTGGTTTCGACTGCCCCGTTGATGTTACAAGGAACCATGCCAACATATGGAAACCAGACTTCCCTTAGAGTAGATCCGCTGAATGGAGAAACTTTTGACGTAGACATTGGTGGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAACCTGGCAGGGAGCAGCACAATTGTCTAGATTCTCAGCCACTTCTTTGAATCAAAATCAAGCCTATCCTAATGATCAATTCAATGCAATAAACTCGAGCATTTCTTCGACCCCCTCAACGTTTGGGAATGTCTCGGTCGATTTTTCCTCGAGAAATGCAGTTGCAGCTCCCTTGCAGGATTCAAGAGATATGCAGTGTCAAGCAGGGGTAGTTGGCAGTGTTATTCAAACTATAAATACCATGCCGAAGCAGAGTTGGGAAGAGCTTAAACACGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCTCTGGTTTCTGGGAATGAGACTCTAAACCCCTTAAGCCAGAGTTTCAATCAGAATAATCTAATATATGATAGAAAGGTCAGTTCATCTTTGATGGTTCCATCAAATGCTGCTCCACTGTCCTTCGCTCAACATAACATGGTCGAAAAATTGGGTCCTAACACGAAGACGAATGTGGATGGCAACTATCTGTTGAACCAAACAAAGTCACACGATGGGTCGACTCAGGGCAGTTCCGAGTCCTTGGATTATATAATGAACGCGATGATCAAACGGGTATAG 2067 44.32 MTVEAHSVTSVGDDGATDRFPVGMRVLAVDDDPICLKVLETLLRRCQYHVTTTKQSIEALKMLRENRNNFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPSEDKARNGGSEGEQGFSSTSNADNAKFNRKRKDQDDDDDEDGKDNGLDNDDPSNQKKPRVVWSVELHKKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVANSTRKQDGAKSVYVVLQKYRLYLKRISNVASQQANMVATFGSKDGAFMGMGSLDGYGDLHGFAGMGRLQNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQNSKNLNSAISNLGKLQPTTMLPPNQPTNLLQGIPTSLELSQLQHSKSTIPIGDFNIINETSGFGVPNSFPDSRVNIGNSTNLVSTAPLMLQGTMPTYGNQTSLRVDPLNGETFDVDIGGSNFLDPDPSNGTWQGAAQLSRFSATSLNQNQAYPNDQFNAINSSISSTPSTFGNVSVDFSSRNAVAAPLQDSRDMQCQAGVVGSVIQTINTMPKQSWEELKHDYSRNVQHNLGAINSLVSGNETLNPLSQSFNQNNLIYDRKVSSSLMVPSNAAPLSFAQHNMVEKLGPNTKTNVDGNYLLNQTKSHDGSTQGSSESLDYIMNAMIKRV 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2328507 2331260 - CmoCh11G004760.1 Cmo11g00476 391095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00476 688 PIRSF RR_ARR_type-B 1 687 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cmo11g00476 688 Gene3D - 207 283 - -
Cmo11g00476 688 MobiDBLite consensus disorder prediction 149 163 - -
Cmo11g00476 688 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 687 IPR045279 GO:0009736
Cmo11g00476 688 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 687 - -
Cmo11g00476 688 SUPERFAMILY Homeodomain-like 209 260 IPR009057 -
Cmo11g00476 688 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cmo11g00476 688 MobiDBLite consensus disorder prediction 147 210 - -
Cmo11g00476 688 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cmo11g00476 688 CDD REC_typeB_ARR-like 26 140 - -
Cmo11g00476 688 Gene3D - 24 188 - -
Cmo11g00476 688 SMART REC_2 24 136 IPR001789 GO:0000160
Cmo11g00476 688 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 256 IPR006447 GO:0003677
Cmo11g00476 688 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00516 Cmo11g00476 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01702 Cmo-Chr1:12766984 Cmo11g00476 Cmo-Chr11:2328507 6.57E-140 dispersed
Cmo11g00476 Cmo-Chr11:2328507 Cmo14g01636 Cmo-Chr14:12981700 1.48E-102 dispersed
Cmo10g00516 Cmo-Chr10:2333938 Cmo11g00476 Cmo-Chr11:2328507 0 wgd
Cmo11g00476 Cmo-Chr11:2328507 Cmo12g01197 Cmo-Chr12:10782304 0 wgd
Cmo11g00476 Cmo-Chr11:2328507 Cmo09g00426 Cmo-Chr9:1898549 2.22E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10555 PF00072 Response_reg 2.00E-25 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00476 K14491 - csv:101213687 1125.92