Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo11g00483 | ATGGGGGATATATCATTGGAAGATGTTAAGAACGAGAACGTTGATCTAGAACGGATTCCTGTGGAGGAAGTTTTTGATCAGTTGAAATGCACGAAGGAAGGATTGAGTACAGCAGGAGGAGAAAAAAGACTCCAAATTTTTGGGCCTAACAAGCTTGAAGAGAAGCAAGAGAGCAAGTTTTTGAAGTTCTTGGGATTCATGTGGAATCCTCTGTCATGGGTCATGGAATGTGCGGCAATCATGGCCATCGTCCTGGCCAATGGAGGAGGGAGACCACCAGATTGGCAAGACTTTGTTGGTATCGTTGTCTTGTTGATCATTAATTCTACCATCAGCTTCATTGAAGAGAACAATGCTGGTAATGCAGCTGCTGCTCTCATGGCTGGTCTTGCCCCTAAAACTAAGGTTCTAAGAGATGGGAAGTGGAAAGAAGAGGAGGCAGCGATTCTGGTTCCAGGAGATGTGATTAGTGTCAAATTGGGAGATATTATCCCGGCCGACGCACGTCTCCTCGATGGCGACCCTTTAAAGATTGATCAGTCTGCTCTTACTGGTGAATCTTTGCCTGTCACCAAGTATCCTGGGGATGAAGTGTTCTCTGGGTCAACTTGTAAGCAAGGTGAGATTGAAGCTGTTGTCATTGCCACTGGTGTGCATACCTTCTTTGGAAAGGCAGCTCATCTCGTGGACAGCACCAACCAAGTTGGTCATTTCCAAAAGGTGTTGACAGCCATTGGAAACTTCTGTATATGCTCGATAGCGGTGGGAATGGTCATCGAGATCTTAGTAATGTATCCAATCCAGAAGAGGCCATACAGAGAAGGAATTGACAACTTGTTGGTGCTTCTCATTGGAGGTATTCCCATTGCTATGCCAACCGTTCTGTCGGTAACCATGGCCATCGGATCGCATCGGCTTTCGCAGCAAGGTGCCATTACGAAGAGAATGACAGCAATTGAAGAGATGGCTGGGATGGATGTCCTGTGCAGTGACAAGACAGGAACTCTCACCCTCAACAAGCTCACGGTGGACAAGTCCCTGATTGAGGTGTTTGTATCAGGCATGAACGAGGATGGTGTTATGTTGTATGCTGCAAGAGCTTCCAGAGTTGAAAATCAAGATGCCATTGATGCCTGCATTGTTGGAATGTTGGCTGACCCCAAAGAGGCAAGGGCAGGAATAACTGAGGTACATTTCTTGCCTTTCAATCCAGTCGATAAGCGTACCGCTATTACCTACATTGACAAAGACGGTAACTGGCACAGAAGCAGCAAGGGTGCTCCTGAACAGATAATTGACCTTTGTGAGCTTAGAGGAGAAATAAGAGAGAAAGCTCATGCCGTTATCGATAACTATGCTAATCGTGGTCTACGTTCCTTGGCAGTTGGTCGACAGACTGTTCAAGATAAGGACAAAGAGAGTGCTGGAGAACCTTGGGAATTTGTTGGTCTCTTGCCCCTATTTGATCCTCCAAGGCATGATAGTGCAGAAACCATCCGTCGAGCTCTCGAACTTGGTGTTAATGTTAAGATGATCACCGGTGACCAACTTGCAATAGGAAAAGAAACTGGTCGAAGGCTCGGTATGGGCACCAACATGTATCCATCATCGTCTTTGCTTGGCCAATCCAAGGATGAGTCTATTGCTTCCATTCCTGTGGATGAACTGATTGAGATGGCTGATGGGTTTGCTGGTGTCTTCCCTGGTAATCACATTGTTCTTTCAACCGCAATGAGATATATGAAACCATCTGCCTTCCTCGCTGAACTAAACTCGTCATTTTTCGGTTGCAGAACATAA | 1800 | 46.11 | MGDISLEDVKNENVDLERIPVEEVFDQLKCTKEGLSTAGGEKRLQIFGPNKLEEKQESKFLKFLGFMWNPLSWVMECAAIMAIVLANGGGRPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWKEEEAAILVPGDVISVKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKYPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEILVMYPIQKRPYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFVSGMNEDGVMLYAARASRVENQDAIDACIVGMLADPKEARAGITEVHFLPFNPVDKRTAITYIDKDGNWHRSSKGAPEQIIDLCELRGEIREKAHAVIDNYANRGLRSLAVGRQTVQDKDKESAGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEMADGFAGVFPGNHIVLSTAMRYMKPSAFLAELNSSFFGCRT | 599 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2349074 | 2351507 | + | CmoCh11G004830.1 | Cmo11g00483 | 391102 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo11g00483 | 599 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 101 | 348 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Cmo11g00483 | 599 | SMART | Cation_ATPase_N_a_2 | 15 | 87 | IPR004014 | - | |
| Cmo11g00483 | 599 | SUPERFAMILY | HAD-like | 325 | 531 | IPR036412 | - | |
| Cmo11g00483 | 599 | Pfam | Cation transporter/ATPase, N-terminus | 19 | 81 | IPR004014 | - | |
| Cmo11g00483 | 599 | Gene3D | - | 94 | 325 | - | - | |
| Cmo11g00483 | 599 | Gene3D | - | 341 | 488 | IPR023299 | GO:0000166 | |
| Cmo11g00483 | 599 | Pfam | E1-E2 ATPase | 131 | 308 | - | - | |
| Cmo11g00483 | 599 | Gene3D | - | 326 | 569 | IPR023214 | - | |
| Cmo11g00483 | 599 | SUPERFAMILY | Calcium ATPase, transduction domain A | 132 | 229 | IPR008250 | - | |
| Cmo11g00483 | 599 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 331 | 337 | IPR018303 | - | |
| Cmo11g00483 | 599 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 14 | 323 | IPR023298 | - | |
| Cmo11g00483 | 599 | PRINTS | P-type cation-transporting ATPase superfamily signature | 483 | 494 | - | - | |
| Cmo11g00483 | 599 | PRINTS | P-type cation-transporting ATPase superfamily signature | 179 | 193 | - | - | |
| Cmo11g00483 | 599 | PRINTS | P-type cation-transporting ATPase superfamily signature | 329 | 343 | - | - | |
| Cmo11g00483 | 599 | PRINTS | P-type cation-transporting ATPase superfamily signature | 505 | 515 | - | - | |
| Cmo11g00483 | 599 | PRINTS | H+-transporting ATPase (proton pump) signature | 445 | 463 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Cmo11g00483 | 599 | PRINTS | H+-transporting ATPase (proton pump) signature | 560 | 576 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Cmo11g00483 | 599 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 571 | - | - | |
| Cmo11g00483 | 599 | TIGRFAM | ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase | 34 | 570 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
| Cmo11g00483 | 599 | Gene3D | - | 132 | 216 | - | - | |
| Cmo11g00483 | 599 | PANTHER | PLASMA MEMBRANE ATPASE | 1 | 571 | - | - | |
| Cmo11g00483 | 599 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 335 | 494 | IPR023299 | GO:0000166 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo11g00483 | Cmo-Chr11:2349074 | Cmo10g00519 | Cmo-Chr10:2351720 | 0 | dispersed | |
| Cmo11g00483 | Cmo-Chr11:2349074 | Cmo10g00518 | Cmo-Chr10:2345080 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo11g00483 | K01535 | - | csv:101214655 | 1060.83 |