Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00483 ATGGGGGATATATCATTGGAAGATGTTAAGAACGAGAACGTTGATCTAGAACGGATTCCTGTGGAGGAAGTTTTTGATCAGTTGAAATGCACGAAGGAAGGATTGAGTACAGCAGGAGGAGAAAAAAGACTCCAAATTTTTGGGCCTAACAAGCTTGAAGAGAAGCAAGAGAGCAAGTTTTTGAAGTTCTTGGGATTCATGTGGAATCCTCTGTCATGGGTCATGGAATGTGCGGCAATCATGGCCATCGTCCTGGCCAATGGAGGAGGGAGACCACCAGATTGGCAAGACTTTGTTGGTATCGTTGTCTTGTTGATCATTAATTCTACCATCAGCTTCATTGAAGAGAACAATGCTGGTAATGCAGCTGCTGCTCTCATGGCTGGTCTTGCCCCTAAAACTAAGGTTCTAAGAGATGGGAAGTGGAAAGAAGAGGAGGCAGCGATTCTGGTTCCAGGAGATGTGATTAGTGTCAAATTGGGAGATATTATCCCGGCCGACGCACGTCTCCTCGATGGCGACCCTTTAAAGATTGATCAGTCTGCTCTTACTGGTGAATCTTTGCCTGTCACCAAGTATCCTGGGGATGAAGTGTTCTCTGGGTCAACTTGTAAGCAAGGTGAGATTGAAGCTGTTGTCATTGCCACTGGTGTGCATACCTTCTTTGGAAAGGCAGCTCATCTCGTGGACAGCACCAACCAAGTTGGTCATTTCCAAAAGGTGTTGACAGCCATTGGAAACTTCTGTATATGCTCGATAGCGGTGGGAATGGTCATCGAGATCTTAGTAATGTATCCAATCCAGAAGAGGCCATACAGAGAAGGAATTGACAACTTGTTGGTGCTTCTCATTGGAGGTATTCCCATTGCTATGCCAACCGTTCTGTCGGTAACCATGGCCATCGGATCGCATCGGCTTTCGCAGCAAGGTGCCATTACGAAGAGAATGACAGCAATTGAAGAGATGGCTGGGATGGATGTCCTGTGCAGTGACAAGACAGGAACTCTCACCCTCAACAAGCTCACGGTGGACAAGTCCCTGATTGAGGTGTTTGTATCAGGCATGAACGAGGATGGTGTTATGTTGTATGCTGCAAGAGCTTCCAGAGTTGAAAATCAAGATGCCATTGATGCCTGCATTGTTGGAATGTTGGCTGACCCCAAAGAGGCAAGGGCAGGAATAACTGAGGTACATTTCTTGCCTTTCAATCCAGTCGATAAGCGTACCGCTATTACCTACATTGACAAAGACGGTAACTGGCACAGAAGCAGCAAGGGTGCTCCTGAACAGATAATTGACCTTTGTGAGCTTAGAGGAGAAATAAGAGAGAAAGCTCATGCCGTTATCGATAACTATGCTAATCGTGGTCTACGTTCCTTGGCAGTTGGTCGACAGACTGTTCAAGATAAGGACAAAGAGAGTGCTGGAGAACCTTGGGAATTTGTTGGTCTCTTGCCCCTATTTGATCCTCCAAGGCATGATAGTGCAGAAACCATCCGTCGAGCTCTCGAACTTGGTGTTAATGTTAAGATGATCACCGGTGACCAACTTGCAATAGGAAAAGAAACTGGTCGAAGGCTCGGTATGGGCACCAACATGTATCCATCATCGTCTTTGCTTGGCCAATCCAAGGATGAGTCTATTGCTTCCATTCCTGTGGATGAACTGATTGAGATGGCTGATGGGTTTGCTGGTGTCTTCCCTGGTAATCACATTGTTCTTTCAACCGCAATGAGATATATGAAACCATCTGCCTTCCTCGCTGAACTAAACTCGTCATTTTTCGGTTGCAGAACATAA 1800 46.11 MGDISLEDVKNENVDLERIPVEEVFDQLKCTKEGLSTAGGEKRLQIFGPNKLEEKQESKFLKFLGFMWNPLSWVMECAAIMAIVLANGGGRPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWKEEEAAILVPGDVISVKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKYPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEILVMYPIQKRPYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFVSGMNEDGVMLYAARASRVENQDAIDACIVGMLADPKEARAGITEVHFLPFNPVDKRTAITYIDKDGNWHRSSKGAPEQIIDLCELRGEIREKAHAVIDNYANRGLRSLAVGRQTVQDKDKESAGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEMADGFAGVFPGNHIVLSTAMRYMKPSAFLAELNSSFFGCRT 599
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 2349074 2351507 + CmoCh11G004830.1 Cmo11g00483 391102
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00483 599 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 348 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo11g00483 599 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Cmo11g00483 599 SUPERFAMILY HAD-like 325 531 IPR036412 -
Cmo11g00483 599 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Cmo11g00483 599 Gene3D - 94 325 - -
Cmo11g00483 599 Gene3D - 341 488 IPR023299 GO:0000166
Cmo11g00483 599 Pfam E1-E2 ATPase 131 308 - -
Cmo11g00483 599 Gene3D - 326 569 IPR023214 -
Cmo11g00483 599 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Cmo11g00483 599 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Cmo11g00483 599 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 323 IPR023298 -
Cmo11g00483 599 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Cmo11g00483 599 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Cmo11g00483 599 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Cmo11g00483 599 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Cmo11g00483 599 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo11g00483 599 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo11g00483 599 PANTHER CALCIUM-TRANSPORTING ATPASE 1 571 - -
Cmo11g00483 599 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 570 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo11g00483 599 Gene3D - 132 216 - -
Cmo11g00483 599 PANTHER PLASMA MEMBRANE ATPASE 1 571 - -
Cmo11g00483 599 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 335 494 IPR023299 GO:0000166
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00483 Cmo-Chr11:2349074 Cmo10g00519 Cmo-Chr10:2351720 0 dispersed
Cmo11g00483 Cmo-Chr11:2349074 Cmo10g00518 Cmo-Chr10:2345080 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00483 K01535 - csv:101214655 1060.83