Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00526 ATGGAGAAAAGGTATGGTTGTTGGGCTGTTTTGACTCGTACTGTTTCTGGTGTTTGCAAATCCTCTGCTTCCAGAGATTCTCCCAACACTATTCCTCGAACTAGCCTAGTTTATGATTCTGCTACCGAAACACGGTATTTAAATGCTAGCAACAGAGATCTCTGTACCCTAAATGACACTGAGCTAGCCTCTGATAATGCCAATTCAACACGATCAGATAACAAAACAACAAGCAAACTTCTTCAGTTCTCTTTTCATGAGCTCAAGGCTGCCACTGGAAACTTCAGACCTGACAGTATTCTTGGGGAAGGTGGATTTGGTTTCGTCTTTAAAGGATGGATTGAAGAGAATGGGACAGCCCCTGCAAAACCTGGATCAGGGATTACAGTAGCTGTTAAGAGCATGAAACAAGATGGTCTTCAAGGCCACAGAGAATGGGTGGCTGAGGTTGCCTTTCTTGGACAACTTCACCACCCGAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCAACATTTGCTTGTTTACGAGTTTATGAGCCGTGGAAGTCTTGAAAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCCAATAGGATTAAGATCGCCCTTGGAGCAGCGAAAGGATTGGCCTTCCTTCATAGCGGTCCAGTACCTGTTATCTATAGAGATTTTAAGACATCCAACATCTTGCTTGATTCTGAATACAATGCAAAGCTTTCGGATTTTGGTTTTGCAAAAGCAGGACCTCAAGGAGACAAGACACATGTTTCTACTAGGGTGATTGGAACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGACATCTGACATCTAAAAACGATGTTTATAGCTTCGGTGTTGTGCTTCTTGAGATTGTAACGGGGAGAAGATCCATGGACAAAAAACGTCCGAGTGGGGAACAAAATCTCGTCTCATGGGCTCGGCCATATTTAGCTGATAAAAGAAGGCTATATCATATAGTGGATCCCCGTTTGGAATTCAACTATTCCATTAAAGGGGTGCAGAAGGTCTCCCAGCTTGCTTGCAGTTGCCTCAGCAGGGATCCAAAACTACGTCCAACCATGGACGAAATCGTGAAGGTTCTGACTCCACTGCAAGATCTCAACGATCTCGCCATCCTAACGTCTCACTGCCGCTTATCTTCACAAGGGAGGCGCAAGAAGAAACCTGATGGCCTCACCTACTCTCAAAGCTTCAGAGCATCTCCACTGAACACCGGAAAGCAGCATATAAGGTGA 1275 44.24 MEKRYGCWAVLTRTVSGVCKSSASRDSPNTIPRTSLVYDSATETRYLNASNRDLCTLNDTELASDNANSTRSDNKTTSKLLQFSFHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSMKQDGLQGHREWVAEVAFLGQLHHPNLVKLIGYCNEDDQHLLVYEFMSRGSLENHLFRRTIPLPWSNRIKIALGAAKGLAFLHSGPVPVIYRDFKTSNILLDSEYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVSWARPYLADKRRLYHIVDPRLEFNYSIKGVQKVSQLACSCLSRDPKLRPTMDEIVKVLTPLQDLNDLAILTSHCRLSSQGRRKKKPDGLTYSQSFRASPLNTGKQHIR 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2569011 2572824 + CmoCh11G005260.1 Cmo11g00526 391145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00526 424 Gene3D Transferase(Phosphotransferase) domain 1 181 389 - -
Cmo11g00526 424 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
Cmo11g00526 424 Gene3D Phosphorylase Kinase; domain 1 68 180 - -
Cmo11g00526 424 MobiDBLite consensus disorder prediction 407 424 - -
Cmo11g00526 424 CDD STKc_IRAK 101 377 - -
Cmo11g00526 424 PANTHER OS01G0588500 PROTEIN-RELATED 57 392 - -
Cmo11g00526 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Cmo11g00526 424 PANTHER OS01G0588500 PROTEIN 57 392 - -
Cmo11g00526 424 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672|GO:0006468
Cmo11g00526 424 MobiDBLite consensus disorder prediction 394 424 - -
Cmo11g00526 424 SUPERFAMILY Protein kinase-like (PK-like) 77 386 IPR011009 -
Cmo11g00526 424 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00526 Cmo12g01221 CCT
Cmo10g00567 Cmo11g00526 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02882 Cmo-Chr4:20514478 Cmo11g00526 Cmo-Chr11:2569011 1.14E-166 dispersed
Cmo11g00526 Cmo-Chr11:2569011 Cmo18g01199 Cmo-Chr18:11991198 2.12E-180 dispersed
Cmo10g00567 Cmo-Chr10:2578452 Cmo11g00526 Cmo-Chr11:2569011 0 wgd
Cmo11g00526 Cmo-Chr11:2569011 Cmo12g01221 Cmo-Chr12:10901190 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74657 PF07714 PK_Tyr_Ser-Thr 8.20E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00526 - - bhj:120071895 828.165