Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00535 ATGTCGAGCTGCATCGATATTGCACCTGAACAGCTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGTTGTGGGCACTGTACAAATCTATGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTTTACACTTCTAGTGGACCTGATTTTCAAGGGGATTTTGGATCTTCATCCAAATGTGATAACAATAAGATGCAAATTCGAGATTCCGCTACAATTGCAGCTGAGGAACGGGTTGTGAATCGACCTCCCGAGAAGCGGCAGAGAGTACCTTCTGCATACAATCAGTTCATAAAAGAGGAAATCCGAAGGATCAAGGCCAAGAACCCTGAGATTAGTCACAGGGAAGCTTTCAGCACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTTGAAACCAATAATCAAGTGAAGATTGATGATGGTTCTGAGCGTTTGATGTCAATGGCTGCACTACTAAACAAATGA 573 43.46 MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVPSAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSERLMSMAALLNK 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2613770 2616030 + CmoCh11G005350.1 Cmo11g00535 391154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00535 190 SUPERFAMILY HMG-box 107 157 IPR036910 -
Cmo11g00535 190 PANTHER PROTEIN YABBY 6-RELATED 1 181 IPR006780 GO:0007275
Cmo11g00535 190 Pfam YABBY protein 9 164 IPR006780 GO:0007275
Cmo11g00535 190 Gene3D High mobility group box domain 100 159 IPR036910 -
Cmo11g00535 190 PANTHER AXIAL REGULATOR YABBY 5 1 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01597 Cmo-Chr2:9202861 Cmo11g00535 Cmo-Chr11:2613770 1.41E-56 dispersed
Cmo05g00029 Cmo-Chr5:107469 Cmo11g00535 Cmo-Chr11:2613770 1.04E-39 dispersed
Cmo11g00535 Cmo-Chr11:2613770 Cmo15g01209 Cmo-Chr15:8382484 5.67E-54 dispersed
Cmo20g00155 Cmo-Chr20:765092 Cmo11g00535 Cmo-Chr11:2613770 7.57E-32 dispersed
Cmo10g00578 Cmo-Chr10:2633020 Cmo11g00535 Cmo-Chr11:2613770 1.18E-107 wgd
Cmo11g00535 Cmo-Chr11:2613770 Cmo12g01231 Cmo-Chr12:10977446 6.30E-85 wgd
Cmo11g00535 Cmo-Chr11:2613770 Cmo05g01308 Cmo-Chr5:10151693 2.94E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10557 PF04690 YABBY 1.30E-69 CL0114 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00535 K25796 - csv:101215951 348.206