Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00535 | ATGTCGAGCTGCATCGATATTGCACCTGAACAGCTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGTTGTGGGCACTGTACAAATCTATGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTTTACACTTCTAGTGGACCTGATTTTCAAGGGGATTTTGGATCTTCATCCAAATGTGATAACAATAAGATGCAAATTCGAGATTCCGCTACAATTGCAGCTGAGGAACGGGTTGTGAATCGACCTCCCGAGAAGCGGCAGAGAGTACCTTCTGCATACAATCAGTTCATAAAAGAGGAAATCCGAAGGATCAAGGCCAAGAACCCTGAGATTAGTCACAGGGAAGCTTTCAGCACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTTGAAACCAATAATCAAGTGAAGATTGATGATGGTTCTGAGCGTTTGATGTCAATGGCTGCACTACTAAACAAATGA | 573 | 43.46 | MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVPSAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSERLMSMAALLNK | 190 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2613770 | 2616030 | + | CmoCh11G005350.1 | Cmo11g00535 | 391154 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00535 | 190 | SUPERFAMILY | HMG-box | 107 | 157 | IPR036910 | - | |
Cmo11g00535 | 190 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 181 | IPR006780 | GO:0007275 | |
Cmo11g00535 | 190 | Pfam | YABBY protein | 9 | 164 | IPR006780 | GO:0007275 | |
Cmo11g00535 | 190 | Gene3D | High mobility group box domain | 100 | 159 | IPR036910 | - | |
Cmo11g00535 | 190 | PANTHER | AXIAL REGULATOR YABBY 5 | 1 | 181 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01597 | Cmo-Chr2:9202861 | Cmo11g00535 | Cmo-Chr11:2613770 | 1.41E-56 | dispersed | |
Cmo05g00029 | Cmo-Chr5:107469 | Cmo11g00535 | Cmo-Chr11:2613770 | 1.04E-39 | dispersed | |
Cmo11g00535 | Cmo-Chr11:2613770 | Cmo15g01209 | Cmo-Chr15:8382484 | 5.67E-54 | dispersed | |
Cmo20g00155 | Cmo-Chr20:765092 | Cmo11g00535 | Cmo-Chr11:2613770 | 7.57E-32 | dispersed | |
Cmo10g00578 | Cmo-Chr10:2633020 | Cmo11g00535 | Cmo-Chr11:2613770 | 1.18E-107 | wgd | |
Cmo11g00535 | Cmo-Chr11:2613770 | Cmo12g01231 | Cmo-Chr12:10977446 | 6.30E-85 | wgd | |
Cmo11g00535 | Cmo-Chr11:2613770 | Cmo05g01308 | Cmo-Chr5:10151693 | 2.94E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10557 | PF04690 | YABBY | 1.30E-69 | CL0114 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00535 | K25796 | - | csv:101215951 | 348.206 |