Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00545 ATGTTTCCCCCACTGCCCCTTCTCTCTGTACTTCCTTCTCTGACAATGCCCAAGTTTAAGAAGTTTCGTGGTGTTAGGCAGCGCCATTGGGGCTCTTGGGTTTCTGAAATTCGCCATCCATTACTGAAGAGGCGGATTTGGTTGGGGACGTTTGAGACGGCGGAGGAAGCGGCAAGAGCGTATGATCAAGCTGCGATTTTGATGAGCGGACGTAATGCCAAAACCAATTTCCCGACGACCCATGACACCAACATTACTACAACCAAGGATTCCCCCAAGGGGTTGTCTGAAATATTGCAAGCTAAGCTCAAGAAATGCTGTCGGACTCCATCGCCTTCCATGACATGTTTGAGGCTCGACACTGAGAATTCCAACATTGGCGTGTGGCAGAAACGTGCTGGGCCACGGTCGGCATCTAGCTGGGTCATGACTGTTGAGCTTGGAAATAAGAAGAGCCATAACAACGAGGATGATTCTCTGATGGGTGTGGTTGTGGCTGATCAGTCCCCGGTGGCGGCGGAAGTGGCGGAGATTCCATCGGAGTTGGATGAAGAAGAGAGAATGGTGGCTTTGCAAATGGTGGAGGAACTGCTTCATATCAGCTATGATGAACCAAACGAATTGTTTGAGATTCAACAGGGGAAGGATGTTTATCTTTAG 660 49.55 MFPPLPLLSVLPSLTMPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDQAAILMSGRNAKTNFPTTHDTNITTTKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGPRSASSWVMTVELGNKKSHNNEDDSLMGVVVADQSPVAAEVAEIPSELDEEERMVALQMVEELLHISYDEPNELFEIQQGKDVYL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2650406 2651144 + CmoCh11G005450.1 Cmo11g00545 391164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00545 219 Pfam AP2 domain 21 69 IPR001471 GO:0003700|GO:0006355
Cmo11g00545 219 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00588 Cmo-Chr8:3585257 Cmo11g00545 Cmo-Chr11:2650406 2.07E-31 dispersed
Cmo11g00545 Cmo-Chr11:2650406 Cmo12g00308 Cmo-Chr12:1914204 2.06E-32 dispersed
Cmo01g01559 Cmo-Chr1:11988840 Cmo11g00545 Cmo-Chr11:2650406 5.02E-70 wgd
Cmo11g00545 Cmo-Chr11:2650406 Cmo09g00470 Cmo-Chr9:2110532 6.18E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10558 PF00847 AP2 1.40E-12 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00545 - - bhj:120071615 308.145