Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo11g00552 | ATGAAAGGGGAAGTACAGTTGGAATCGTCTATTGCCCAAAAACCTACTGACTCTGATCCTCTGCTTGAGAATCAGTCCGATTCATCCCATGGTGGAACCTCCGATGAAATCAGGGACGATGAGGATGCTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTAGAGAGCGACGCTGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCATTAAGGCAAATTTCTTTATTTTAGTTCTTTTACGCTGTTCCTGCTTTCGACTATCAAGGATTTGCTTGTTTCCTATTCTATTTTCTTATGGTTTTAATCAATCTGAAAGGATTCCCGTAATTCTGCAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCATCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGGGATGTTCTCCTTGTATTTCTAGCTGTTCAAACTTTAATAGCTGCAATAGGTGGTTATGCGTATATTATGGACAAAGATGGGGCATTCAGAAATTCTTTCAGTGATGGATGGGATCGTATTCTCTCCAAACATCCTATTCCATTTTATTACTGTATTGGGGTTCTGGCCTTCTTTGTTCTGCTTGGATTTTTCGGGCTCATACTACATTGTTCCTCCCTGAATAGTAACGATCCACGAGTTGCTGGGTGTCACAACTGTTGCTATGGCTGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAGGCCTGCTTTGCCCTAGTTATTGTTTTCGTCGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTTGCTGCTACTATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATATGTGGTGGAGGATCTTCACGGTTGTTATACCCCTCCAAAATTGGATCCAGAACATGAACAGCACTTGAAAATGCTACAGCTCCTGTAA | 1044 | 42.43 | MKGEVQLESSIAQKPTDSDPLLENQSDSSHGGTSDEIRDDEDAEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKANFFILVLLRCSCFRLSRICLFPILFSYGFNQSERIPVILQEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAIGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLDPEHEQHLKMLQLL | 347 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2687384 | 2690967 | + | CmoCh11G005520.1 | Cmo11g00552 | 391171 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo11g00552 | 347 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 156 | IPR013083 | - | |
| Cmo11g00552 | 347 | Pfam | RING-variant domain | 51 | 89 | IPR011016 | GO:0008270 | |
| Cmo11g00552 | 347 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Cmo11g00552 | 347 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 43 | 117 | IPR011016 | GO:0008270 | |
| Cmo11g00552 | 347 | MobiDBLite | consensus disorder prediction | 9 | 31 | - | - | |
| Cmo11g00552 | 347 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 93 | - | - | |
| Cmo11g00552 | 347 | SMART | ringv_2 | 50 | 93 | IPR011016 | GO:0008270 | |
| Cmo11g00552 | 347 | CDD | RING_CH-C4HC3_MARCH | 51 | 93 | - | - | |
| Cmo11g00552 | 347 | SUPERFAMILY | RING/U-box | 49 | 92 | - | - | |
| Cmo11g00552 | 347 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 130 | 347 | - | - | |
| Cmo11g00552 | 347 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 93 | - | - | |
| Cmo11g00552 | 347 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 130 | 347 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo03g00823 | Cmo-Chr3:6598502 | Cmo11g00552 | Cmo-Chr11:2687384 | 1.05E-61 | dispersed | |
| Cmo11g00552 | Cmo-Chr11:2687384 | Cmo14g01212 | Cmo-Chr14:10324732 | 2.55E-32 | dispersed | |
| Cmo10g00622 | Cmo-Chr10:2817436 | Cmo11g00552 | Cmo-Chr11:2687384 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo11g00552 | - | - | cmax:111465033 | 608.986 |