Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00552 ATGAAAGGGGAAGTACAGTTGGAATCGTCTATTGCCCAAAAACCTACTGACTCTGATCCTCTGCTTGAGAATCAGTCCGATTCATCCCATGGTGGAACCTCCGATGAAATCAGGGACGATGAGGATGCTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTAGAGAGCGACGCTGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCATTAAGGCAAATTTCTTTATTTTAGTTCTTTTACGCTGTTCCTGCTTTCGACTATCAAGGATTTGCTTGTTTCCTATTCTATTTTCTTATGGTTTTAATCAATCTGAAAGGATTCCCGTAATTCTGCAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCATCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGGGATGTTCTCCTTGTATTTCTAGCTGTTCAAACTTTAATAGCTGCAATAGGTGGTTATGCGTATATTATGGACAAAGATGGGGCATTCAGAAATTCTTTCAGTGATGGATGGGATCGTATTCTCTCCAAACATCCTATTCCATTTTATTACTGTATTGGGGTTCTGGCCTTCTTTGTTCTGCTTGGATTTTTCGGGCTCATACTACATTGTTCCTCCCTGAATAGTAACGATCCACGAGTTGCTGGGTGTCACAACTGTTGCTATGGCTGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAGGCCTGCTTTGCCCTAGTTATTGTTTTCGTCGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTTGCTGCTACTATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATATGTGGTGGAGGATCTTCACGGTTGTTATACCCCTCCAAAATTGGATCCAGAACATGAACAGCACTTGAAAATGCTACAGCTCCTGTAA 1044 42.43 MKGEVQLESSIAQKPTDSDPLLENQSDSSHGGTSDEIRDDEDAEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKANFFILVLLRCSCFRLSRICLFPILFSYGFNQSERIPVILQEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAIGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLDPEHEQHLKMLQLL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2687384 2690967 + CmoCh11G005520.1 Cmo11g00552 391171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00552 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 156 IPR013083 -
Cmo11g00552 347 Pfam RING-variant domain 51 89 IPR011016 GO:0008270
Cmo11g00552 347 MobiDBLite consensus disorder prediction 1 43 - -
Cmo11g00552 347 ProSiteProfiles Zinc finger RING-CH-type profile. 43 117 IPR011016 GO:0008270
Cmo11g00552 347 MobiDBLite consensus disorder prediction 9 31 - -
Cmo11g00552 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 93 - -
Cmo11g00552 347 SMART ringv_2 50 93 IPR011016 GO:0008270
Cmo11g00552 347 CDD RING_CH-C4HC3_MARCH 51 93 - -
Cmo11g00552 347 SUPERFAMILY RING/U-box 49 92 - -
Cmo11g00552 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 130 347 - -
Cmo11g00552 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 93 - -
Cmo11g00552 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 130 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00552 - - - cmax:111465033 608.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00823 Cmo-Chr3:6598502 Cmo11g00552 Cmo-Chr11:2687384 1.05E-61 dispersed
Cmo11g00552 Cmo-Chr11:2687384 Cmo14g01212 Cmo-Chr14:10324732 2.55E-32 dispersed
Cmo10g00622 Cmo-Chr10:2817436 Cmo11g00552 Cmo-Chr11:2687384 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g01003 . 83 569 C3H Transcription Factor Family AT2G31510 76.8 1.1e-232 803.1
Cmo17g00577 CST 77 660 C3H Transcription Factor Family AT2G31510 63.4 2.6e-213 738.8
Cmo08g00213 CST 55 503 C3H Transcription Factor Family AT2G31510 74.7 7.0e-203 704.1
Cmo12g01003 . 52 528 C3H Transcription Factor Family AT2G31770 58.3 3.9e-170 595.5
Cmo08g00213 CST 58 474 C3H Transcription Factor Family AT2G31770 57.5 5.3e-143 505.4
Cmo12g01003 . 66 528 C3H Transcription Factor Family AT2G31760 59.4 5.3e-169 591.7
Cmo08g00213 CST 58 467 C3H Transcription Factor Family AT2G31760 57.7 3.6e-141 499.2
Cmo02g01662 CST 1 193 C3H Transcription Factor Family AT3G03550 50.7 2.9e-49 193.4
Cmo03g01106 . 8 169 C3H Transcription Factor Family AT5G06490 50.3 2.7e-44 176.0
Cmo03g01106 . 8 169 C3H Transcription Factor Family AT5G06490 50.3 2.7e-44 176.0
Cmo15g00232 CST 1 226 C3H Transcription Factor Family AT3G02290 61.1 2.9e-74 275.8
Cmo04g02944 CST 1 220 C3H Transcription Factor Family AT3G02290 60.5 4.6e-72 268.5
Cmo10g00622 . 1 304 C3H Transcription Factor Family AT1G11020 76.3 1.7e-136 483.0
Cmo11g00552 . 1 347 C3H Transcription Factor Family AT1G11020 66.8 1.2e-129 460.3
Cmo15g01303 CST 1 214 C3H Transcription Factor Family AT5G41350 52.5 4.0e-38 155.6
Cmo14g01212 . 59 218 C3H Transcription Factor Family AT1G50440 75.6 1.8e-68 256.5
Cmo01g00002 . 50 209 C3H Transcription Factor Family AT1G50440 73.8 1.7e-66 250.0
Cmo07g01303 . 1 353 C3H Transcription Factor Family AT5G08750 60.8 1.1e-112 404.1
Cmo03g00035 . 8 326 C3H Transcription Factor Family AT5G08750 57.8 3.8e-97 352.4
Cmo16g00283 . 28 553 C3H Transcription Factor Family AT3G16090 63.6 5.8e-173 604.7
Cmo04g00409 . 1 547 C3H Transcription Factor Family AT3G16090 61.8 3.5e-170 595.5
Cmo01g00952 . 31 185 C3H Transcription Factor Family AT1G22510 67.7 1.4e-56 216.9
Cmo15g00232 CST 1 225 C3H Transcription Factor Family AT5G38895 57.1 2.3e-72 270.0
Cmo04g02944 CST 1 220 C3H Transcription Factor Family AT5G38895 55.7 7.0e-69 258.5
Cmo05g00227 . 21 227 C3H Transcription Factor Family AT1G19310 67.8 6.5e-79 291.2
Cmo12g00442 CCT,CST,ECH 16 225 C3H Transcription Factor Family AT1G19310 62.8 4.1e-73 271.9
Cmo03g01032 . 74 283 C3H Transcription Factor Family AT1G19310 59.4 6.1e-69 258.1
Cmo07g00775 . 19 221 C3H Transcription Factor Family AT1G19310 59.2 3.7e-66 248.8
Cmo01g00952 . 35 185 C3H Transcription Factor Family AT1G72175 68.9 4.1e-53 204.9
Cmo01g00512 . 68 247 C3H Transcription Factor Family AT1G26800 51.3 6.6e-46 181.4
Cmo14g02111 . 1 186 C3H Transcription Factor Family AT4G00335 51.3 2.3e-45 179.5
Cmo03g00823 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 1.2e-159 560.1
Cmo05g00490 . 74 181 C3H Transcription Factor Family AT5G07040 65.7 1.4e-38 156.8
Cmo11g00263 . 1 389 C3H Transcription Factor Family AT1G18470 76.3 6.7e-178 620.9
Cmo10g00269 . 1034 1412 C3H Transcription Factor Family AT1G18470 76.3 1.6e-174 609.8
Cmo04g02108 . 11 198 C3H Transcription Factor Family AT1G18470 66.8 1.3e-67 254.6
Cmo04g02107 . 4 213 C3H Transcription Factor Family AT1G18470 55.9 1.4e-61 234.6
Cmo15g00971 . 82 300 C3H Transcription Factor Family AT1G68200 51.7 3.0e-50 196.4
Cmo12g01003 . 52 528 C3H Transcription Factor Family AT2G31770 58.3 3.9e-170 595.5
Cmo08g00213 CST 58 474 C3H Transcription Factor Family AT2G31770 57.5 5.3e-143 505.4
Cmo12g01003 . 66 528 C3H Transcription Factor Family AT2G31760 59.4 5.3e-169 591.7
Cmo08g00213 CST 58 467 C3H Transcription Factor Family AT2G31760 57.7 3.6e-141 499.2
Cmo09g01027 . 39 270 C3H Transcription Factor Family AT5G55970 67.2 2.1e-91 333.2
Cmo01g01104 CST 20 276 C3H Transcription Factor Family AT5G55970 61.6 2.8e-91 332.8
Cmo09g01028 CST 91 316 C3H Transcription Factor Family AT5G55970 68.6 1.1e-90 330.9
Cmo07g01303 . 1 353 C3H Transcription Factor Family AT5G63780 55.4 1.2e-103 374.0
Cmo03g00035 . 8 343 C3H Transcription Factor Family AT5G63780 54.7 1.3e-92 337.4
Cmo06g00101 . 1 422 C3H Transcription Factor Family AT3G58030 53.1 6.4e-107 385.2
Cmo14g00414 . 1 425 C3H Transcription Factor Family AT3G58030 52.9 3.3e-103 372.9
Cmo01g01104 CST 35 343 C3H Transcription Factor Family AT4G26580 61.7 1.1e-111 400.6
Cmo09g01027 . 41 338 C3H Transcription Factor Family AT4G26580 63.4 1.1e-111 400.6
Cmo09g01028 CST 84 380 C3H Transcription Factor Family AT4G26580 62.1 5.3e-109 391.7
Cmo09g01208 CST 8 143 C3H Transcription Factor Family AT4G10150 55.7 2.7e-43 172.9
Cmo08g00521 . 29 274 C3H Transcription Factor Family AT3G63530 50.6 4.7e-62 235.3
Cmo07g01242 CST 88 553 C3H Transcription Factor Family AT5G01960 68.4 1.0e-170 597.0
Cmo04g01120 . 464 932 C3H Transcription Factor Family AT5G01960 59.4 1.5e-148 523.5
Cmo04g00096 . 1 481 C3H Transcription Factor Family AT5G01960 56.6 3.6e-147 518.8
Cmo03g00286 CST 1 410 C3H Transcription Factor Family AT5G01960 60.7 1.6e-134 476.9
Cmo02g00242 . 1 151 C3H Transcription Factor Family AT2G04240 58.6 4.2e-43 171.8
Cmo20g00697 . 90 243 C3H Transcription Factor Family AT2G04240 56.2 4.6e-42 168.3
Cmo02g01316 . 15 243 C3H Transcription Factor Family AT5G19430 55.4 1.1e-63 240.7
Cmo04g00637 . 138 583 C3H Transcription Factor Family AT5G45290 50.4 2.6e-97 353.6
Cmo16g00558 . 141 559 C3H Transcription Factor Family AT5G45290 50.8 1.1e-87 321.6
Cmo02g01316 . 17 243 C3H Transcription Factor Family AT5G12310 53.9 3.6e-57 219.2
Cmo11g00343 . 76 369 C3H Transcription Factor Family AT5G05810 52.0 1.5e-73 274.2
Cmo04g03049 CST 58 216 C3H Transcription Factor Family AT5G05830 66.0 2.2e-57 219.5
Cmo15g00126 CST 35 215 C3H Transcription Factor Family AT5G05830 58.2 2.2e-57 219.5
Cmo06g00261 CCT,CST,ECH 71 232 C3H Transcription Factor Family AT5G05830 63.6 1.9e-56 216.5
Cmo14g00095 CCT,CST,ECH 70 218 C3H Transcription Factor Family AT5G05830 57.0 1.9e-45 179.9
Cmo07g01079 CCT,ECH 33 163 C3H Transcription Factor Family AT5G05830 61.4 2.7e-39 159.5
Cmo15g00232 CST 1 226 C3H Transcription Factor Family AT5G15790 60.1 2.1e-72 269.6
Cmo04g02944 CST 1 220 C3H Transcription Factor Family AT5G15790 59.9 1.8e-71 266.5
Cmo15g00107 CCT,CST,ECH 428 690 C3H Transcription Factor Family AT3G55530 78.0 3.6e-108 388.7
Cmo04g03072 . 1 257 C3H Transcription Factor Family AT3G55530 74.7 8.7e-102 367.5
Cmo08g00360 . 1 273 C3H Transcription Factor Family AT1G63900 74.1 6.9e-115 411.0
Cmo06g01205 . 10 393 C3H Transcription Factor Family AT2G44580 52.6 2.5e-115 412.9
Cmo12g00442 CCT,CST,ECH 25 150 C3H Transcription Factor Family AT1G74990 60.6 9.6e-41 163.7
Cmo05g00227 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 1.6e-40 162.9
Cmo07g00775 . 10 145 C3H Transcription Factor Family AT1G74990 52.1 6.4e-37 151.0
Cmo01g01740 . 3 335 C3H Transcription Factor Family AT5G20910 56.4 9.2e-100 360.9
Cmo16g00283 . 146 546 C3H Transcription Factor Family AT1G65040 56.8 4.0e-114 408.7
Cmo04g00409 . 119 546 C3H Transcription Factor Family AT1G65040 52.8 2.8e-107 386.0
Cmo03g01032 . 75 285 C3H Transcription Factor Family AT2G23780 62.1 9.8e-75 277.3
Cmo07g00775 . 8 223 C3H Transcription Factor Family AT2G23780 57.4 3.3e-70 262.3
Cmo05g00227 . 6 229 C3H Transcription Factor Family AT2G23780 56.5 4.0e-68 255.4
Cmo12g00442 CCT,CST,ECH 6 191 C3H Transcription Factor Family AT2G23780 61.6 6.6e-63 238.0
Cmo14g00512 CCT 1 319 C3H Transcription Factor Family AT3G10810 50.2 4.3e-75 279.6
Cmo15g01308 . 1 170 C3H Transcription Factor Family AT1G63840 57.2 5.4e-46 181.4
Cmo02g01469 . 1 170 C3H Transcription Factor Family AT1G63840 57.8 7.0e-46 181.0
Cmo08g00866 . 1 152 C3H Transcription Factor Family AT1G63840 51.3 3.4e-40 162.2
Cmo15g01028 . 34 337 C3H Transcription Factor Family AT1G68070 67.3 1.5e-114 410.2
Cmo04g02205 . 8 374 C3H Transcription Factor Family AT1G68070 59.6 2.0e-111 399.8
Cmo16g01058 CST 47 376 C3H Transcription Factor Family AT1G68070 50.6 1.1e-85 314.3
Cmo09g00034 CST 4 178 C3H Transcription Factor Family AT1G76410 56.5 2.5e-52 202.6
Cmo06g00159 . 1 169 C3H Transcription Factor Family AT1G76410 52.9 4.7e-43 171.8
Cmo05g00674 . 1 410 C3H Transcription Factor Family AT1G80400 53.6 3.6e-112 402.5
Cmo12g00254 . 1 411 C3H Transcription Factor Family AT1G80400 51.5 2.9e-109 392.9
Cmo06g00159 . 22 160 C3H Transcription Factor Family AT2G17450 60.8 4.4e-41 165.2
Cmo12g01003 . 83 569 C3H Transcription Factor Family AT2G31510 76.8 1.1e-232 803.1
Cmo17g00577 CST 77 660 C3H Transcription Factor Family AT2G31510 63.4 2.6e-213 738.8
Cmo08g00213 CST 55 503 C3H Transcription Factor Family AT2G31510 74.7 7.0e-203 704.1
Cmo03g01106 . 7 168 C3H Transcription Factor Family AT2G35910 64.4 5.9e-53 204.9
Cmo07g00849 . 7 175 C3H Transcription Factor Family AT2G35910 52.6 2.5e-43 172.9
Cmo14g00369 . 13 163 C3H Transcription Factor Family AT2G35910 54.1 4.3e-43 172.2
Cmo03g00108 . 3 356 C3H Transcription Factor Family AT2G41980 70.6 4.2e-145 511.5
Cmo07g01333 CST 1 269 C3H Transcription Factor Family AT2G41980 79.6 2.4e-129 459.1
Cmo16g00056 CST 61 318 C3H Transcription Factor Family AT2G41980 81.0 4.2e-129 458.4
Cmo18g01361 CST 61 318 C3H Transcription Factor Family AT2G41980 80.6 1.2e-128 456.8
Cmo18g01362 . 63 320 C3H Transcription Factor Family AT2G41980 80.6 2.3e-127 452.6
Cmo18g00871 . 31 305 C3H Transcription Factor Family AT2G41980 75.8 1.5e-126 449.9
Cmo15g00849 CCT,CST 80 337 C3H Transcription Factor Family AT2G41980 78.7 3.7e-125 445.3
Cmo17g00539 . 43 301 C3H Transcription Factor Family AT2G41980 75.7 5.8e-123 438.0
Cmo04g02313 CCT,CST 48 305 C3H Transcription Factor Family AT2G41980 77.5 7.6e-123 437.6
Cmo04g01413 CCT 62 351 C3H Transcription Factor Family AT2G41980 70.3 3.5e-120 428.7
Cmo08g00116 . 44 302 C3H Transcription Factor Family AT2G41980 73.0 1.3e-119 426.8
Cmo14g01721 CST 120 393 C3H Transcription Factor Family AT3G06140 61.9 9.7e-93 337.8
Cmo06g01437 CST 101 403 C3H Transcription Factor Family AT3G06140 54.5 1.0e-86 317.8
Cmo06g00369 CST 33 329 C3H Transcription Factor Family AT3G09770 58.7 4.1e-85 312.4
Cmo14g00198 CST 34 357 C3H Transcription Factor Family AT3G09770 56.1 2.1e-84 310.1
Cmo11g01570 . 109 675 C3H Transcription Factor Family AT3G26730 54.3 8.1e-163 571.6
Cmo10g00136 CCT,CST 58 351 C3H Transcription Factor Family AT3G47990 71.4 3.6e-125 445.3
Cmo11g00101 CCT,CST 58 368 C3H Transcription Factor Family AT3G47990 67.8 6.4e-122 434.5
Cmo13g00922 . 462 754 C3H Transcription Factor Family AT3G47990 68.9 3.0e-119 425.6
Cmo18g00124 CCT 58 291 C3H Transcription Factor Family AT3G47990 77.8 4.1e-113 405.2
Cmo09g00034 CST 4 185 C3H Transcription Factor Family AT1G20823 57.8 1.0e-51 200.7
Cmo06g00159 . 28 169 C3H Transcription Factor Family AT1G20823 63.8 1.2e-44 177.2
Cmo20g00883 . 30 413 C3H Transcription Factor Family AT3G18930 53.1 5.5e-84 308.9
Cmo16g01302 . 20 235 C3H Transcription Factor Family AT5G66070 73.6 1.9e-75 279.6
Cmo06g00127 . 59 274 C3H Transcription Factor Family AT5G66070 73.1 4.7e-74 275.0
Cmo06g00331 . 8 272 C3H Transcription Factor Family AT5G02750 53.2 2.7e-66 249.6
Cmo10g00269 . 1034 1490 C3H Transcription Factor Family AT1G73950 72.2 2.6e-196 682.2
Cmo11g00263 . 5 467 C3H Transcription Factor Family AT1G73950 71.3 6.7e-189 657.5
Cmo04g02107 . 4 303 C3H Transcription Factor Family AT1G73950 50.2 3.4e-76 283.1
Cmo04g02108 . 12 198 C3H Transcription Factor Family AT1G73950 66.1 5.0e-67 252.7
Cmo09g01208 CST 3 144 C3H Transcription Factor Family AT1G33480 59.9 3.5e-44 176.0
Cmo15g01028 . 2 243 C3H Transcription Factor Family AT2G01735 59.8 1.4e-74 276.9
Cmo04g02205 . 2 261 C3H Transcription Factor Family AT2G01735 55.9 6.6e-72 268.1
Cmo16g01058 CST 60 269 C3H Transcription Factor Family AT2G01735 54.2 2.6e-52 203.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007102 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00552 Cmo_Chr11 FPKM 28.781757 22.509315 24.400869 24.842087 16.413776 15.278012 17.864229 25.968912 27.193279 30.521553