Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00553 ATGGAGGGCCTCAGAAACAGAGGAGTTTTCAGGGTTTCTGTTTGTGGGCAACAGGAGCTCGAGCAACTCTCTAGAGATGGCAGTCAGTATAGCCTCACCACCGGTGTATTGCCGTCTCTTGGAGCTAGAAGCAACCGGAGAGTTAAGCTTCGGTGGTTTATCATATCGCCCTATGACCGTCGATACAGGATCTGGGAGACATTTCTAGTTGTTTTAGTGGTTTATACAGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCCCAATCGCCACTCTCAGTTACAGACAATGTGGTTAATGGGTTTTTTGCTGTGGATATTGTTCTTACATTCTTTGTGGCTTATCTTCATAAAGCCACCTATTTACTTGTGGATGAACCAAAGAAGATAGCTCTAAAGTATGCACGTTCATGGCTAATCTTTGATGTCATATCAACAATCCCTTCCGAACTTGCTCAGAAAATTTCCCCACCACCGCTCCGTTCTTATGGATTATTCAACATGCTTCGTTTATGGCGTCTAAGAAGAGTCAGTGCTCTGTTTTCCAGATTGGAAAAAGATAAGAACTACAACTACTTCTGGGTTCGATGTGCGAAGCTCATTTGTGTTACTCTCTTTGCGGTTCATTGTGCTGCATGTTTCTATTATCTTATTGCTGCTCGTAATAGTGACCCGACTAAAACATGGATTGGAGCGTCTATTGATGACTTTCTTAATCAAAGTTTGTGGGTTAGATATGTCACTTCCATTTACTGGTCCATCACTACCTTAACCACTGTTGGGTATGGCGATTTGCATCCTGTGAATTCAAAGGAGATGATTTTTGACATCTTCTACATGCTTTTCAATCTTGGCTTGACAGCATATTTGATTGGAAATATGACCAACTTAGTTGTTCATGGCACCGGTAGAACTAGAAAATTTAGAGATACCATTCAAGCGGCTTCGAGTTTCGCTCATCGGAATCAACTTCCTCCCCGTTTGCAAGATCAAATGCTTGCACATTTGTGTCTAAAGTTCAGGACTGACTCTGAGGGATTGCAGCAGCAAGAAACTCTTGACTCCTTACCTAAAGCCATCCGATCGAGCATTTCTCATTATCTGTTCTATTCTCTAGTAGACAAAGTCTACTTGTTTCGTGGTGTTTCGAATGATCTACTTTTTCAACTGGTTTCAGAAATGAAGGCAGAGTACTTTCCTCCAAAGGAGGATGTGATTTTACAAAACGAAGCGCCGACCGACTTTTACATTCTTGTCACCGGTGCTGTGGATTTGCTGGTTCTCAAGAATGGAGTTGAACAGCTTGTTGGAGAGGCTAGAACCGGGGATCTTTGTGGTGAGATTGGGGTGTTATGTTACAGGCCACAACTATTTACGGTGCGCACGAAGCGATTGAGTCAGTTGCTGCGTCTGAATCGTACTGCTTTCCTTAATATCGTTCAATCTAATGTCGGCGATGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAGGGACCTCAAAGACAAGGACCCCATCATGGAAGGGGTATTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTCAGTCTTTGCTTTGCAACACTTAGAGGAGATGACTTGCTTTTACACCAGCTTTTGAAACGAGGTCTCGATCCAAATGAATCGGACAACAACGGGCGTACTTCACTCCACATAGCAGCATCAAATGGAAACGAGAACTGTGTGCTTCTGTTACTGGACTATGGAGCTGATCCCAATAGCAGAGATTCTGATGGAAGTGTGCCATTGTGGGAGGCGATACTAGGTGGCCATGAGCCAGTTATTCAGCTACTTATGGACAATGGAGCTAATCTTCGATCGGGGGACGTGGGTCAATTTGTGTGCACTGCTGCAGAGCAAAACAACCTCCAGTTGCTCAAGGAGATTGTCCGATATGGAGGAGATGTTAGGAGTGCCAAGATCAATGGAACGACAGCTTTACATGTTGCTGTTTGTGAAGACAACATTGAGATTGTTAAGTTCCTTCTTCAACAAGGAGCTGATATTGACAAAGCTGATGTTCATGGATGGACTCCAAGAGATCTAGCAGACCAACAGGGGCATGAAGAGATTAAAAATCTCTTCCAGACAACCAAAGAGTCAAAAACTCAATCTGTCATTGCCATTCCCGAGAAGCAGACTGGGATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTACGATTCGCCCCGTACCTCAGGAAGGAAATGATGGTTCATTGTCGGGTCATTCACGTCCACGGCGTAGAACTAACAACTTCAATAACTCATTGTTTGGAATCATGTCAGCAGCTCACTCTGGCGGGAAAGACATTCTTTTTCCTGATAACCAAACCGGAGGAGAGCACTCAGGAACCAACCCTGCTAGGGTGATAATCAGCTGTCCAGAGGTTGGCGAAGTTGGTGGGAAGTTGGTGCTGCTTCCGGGAAGCTACAACGAGCTGCTCGAGATTGGTTCGAAGAAATATGGGATTGTGGGTGCAAAGGTATTGACCAAAGATGGAGCTGCCATTGAAGATATAGAGGTCATTAGAGACGGTGATCATCTTGTTTTTGTCAGCGATGGAAAAACCATATAG 2622 44.43 MEGLRNRGVFRVSVCGQQELEQLSRDGSQYSLTTGVLPSLGARSNRRVKLRWFIISPYDRRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLHKATYLLVDEPKKIALKYARSWLIFDVISTIPSELAQKISPPPLRSYGLFNMLRLWRLRRVSALFSRLEKDKNYNYFWVRCAKLICVTLFAVHCAACFYYLIAARNSDPTKTWIGASIDDFLNQSLWVRYVTSIYWSITTLTTVGYGDLHPVNSKEMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTGRTRKFRDTIQAASSFAHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQLVGEARTGDLCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLRDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTSLHIAASNGNENCVLLLLDYGADPNSRDSDGSVPLWEAILGGHEPVIQLLMDNGANLRSGDVGQFVCTAAEQNNLQLLKEIVRYGGDVRSAKINGTTALHVAVCEDNIEIVKFLLQQGADIDKADVHGWTPRDLADQQGHEEIKNLFQTTKESKTQSVIAIPEKQTGIRFLGRFTSEPTIRPVPQEGNDGSLSGHSRPRRRTNNFNNSLFGIMSAAHSGGKDILFPDNQTGGEHSGTNPARVIISCPEVGEVGGKLVLLPGSYNELLEIGSKKYGIVGAKVLTKDGAAIEDIEVIRDGDHLVFVSDGKTI 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2690138 2694600 - CmoCh11G005530.1 Cmo11g00553 391172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00553 873 ProSiteProfiles cAMP/cGMP binding motif profile. 380 482 IPR000595 -
Cmo11g00553 873 Pfam Cyclic nucleotide-binding domain 400 485 IPR000595 -
Cmo11g00553 873 CDD CAP_ED 380 485 IPR000595 -
Cmo11g00553 873 Gene3D - 63 301 - -
Cmo11g00553 873 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
Cmo11g00553 873 ProSiteProfiles Ankyrin repeat region circular profile. 657 688 - -
Cmo11g00553 873 PRINTS Ankyrin repeat signature 561 576 IPR002110 GO:0005515
Cmo11g00553 873 PRINTS Ankyrin repeat signature 673 687 IPR002110 GO:0005515
Cmo11g00553 873 MobiDBLite consensus disorder prediction 741 766 - -
Cmo11g00553 873 Pfam KHA, dimerisation domain of potassium ion channel 804 866 IPR021789 -
Cmo11g00553 873 Gene3D - 528 712 IPR036770 -
Cmo11g00553 873 PANTHER POTASSIUM CHANNEL AKT1 6 871 IPR045319 GO:0005249|GO:0006813
Cmo11g00553 873 Pfam Ankyrin repeats (3 copies) 632 706 IPR002110 GO:0005515
Cmo11g00553 873 Pfam Ankyrin repeats (3 copies) 532 621 IPR002110 GO:0005515
Cmo11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00553 873 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo11g00553 873 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Cmo11g00553 873 ProSiteProfiles KHA domain profile. 804 873 IPR021789 -
Cmo11g00553 873 PANTHER K+ TRANSPORTER 1-RELATED 6 871 - -
Cmo11g00553 873 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Cmo11g00553 873 ProSiteProfiles Ankyrin repeat region circular profile. 593 624 - -
Cmo11g00553 873 SUPERFAMILY Ankyrin repeat 531 710 IPR036770 -
Cmo11g00553 873 Gene3D Jelly Rolls 345 506 IPR014710 -
Cmo11g00553 873 MobiDBLite consensus disorder prediction 752 766 - -
Cmo11g00553 873 SUPERFAMILY cAMP-binding domain-like 306 501 IPR018490 -
Cmo11g00553 873 Pfam Ion transport protein 63 303 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo11g00553 873 SMART cnmp_10 380 497 IPR000595 -
Cmo11g00553 873 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515
Cmo11g00553 873 SMART ANK_2a 560 589 IPR002110 GO:0005515
Cmo11g00553 873 SMART ANK_2a 657 686 IPR002110 GO:0005515
Cmo11g00553 873 SMART ANK_2a 593 622 IPR002110 GO:0005515
Cmo11g00553 873 SMART ANK_2a 624 653 IPR002110 GO:0005515
Cmo11g00553 873 SMART ANK_2a 527 556 IPR002110 GO:0005515
Cmo11g00553 873 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02411 Cmo-Chr4:17941080 Cmo11g00553 Cmo-Chr11:2690138 2.69E-126 dispersed
Cmo11g00553 Cmo-Chr11:2690138 Cmo13g00587 Cmo-Chr13:6533380 6.14E-07 dispersed
Cmo15g00753 Cmo-Chr15:3699749 Cmo11g00553 Cmo-Chr11:2690138 7.15E-08 dispersed
Cmo10g00620 Cmo-Chr10:2810905 Cmo11g00553 Cmo-Chr11:2690138 0 wgd
Cmo11g00553 Cmo-Chr11:2690138 Cmo09g00479 Cmo-Chr9:2166992 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00553 K21867 - csv:101220784 1598.95