Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00556 ATGAACCACACTCCACCGCCGCCGTTGGACTCAATCAAGATCCCTTTCCTATGCGCCCTCCTCTTCATACTTGCTGTCAAGATGGGCGCGGCCTTGTGGTGGAAGCCCAGAAGGATAGAAGCACACTTTCTCCGCCAAGGAATTCGCGGCCCTCCTTATCGTTTCTTCATCGGTAACTTCAAAGAGTTGGACTCTATGATGCTCGCCGCTACCTCCCGTCCGATGCCCAATTTCTCCCACAATATTCTCCCCCGCGTCCTCTCTTTTTACCATCATTGGAAGAAAATTTACGGCTCCACATTTCTGATCTGGTTCGGACCCATTGTTCGAGTGGCGGTGTCCGACCCGGACATGATCCGAGACATCTTGACCACCAACTCAGAATTCTACGAGAAAAACGAAGCGCACCCTCTCATCAAAAAGCTCGAGGGCGACGGCCTCCTTACTCTCAAGGATCAGAAATGGGCTCTCCATCGCAAGATCATCTCCCCCGTATTCAACATGGAGAATCTCAAGTTGTTGATTCCGGTGGTGGAGGAAAGTGTGGTGGATATGGTGGAGAAATGGTCGGCCATGGCAGGCGGCGGCGCCTCGGACGAGGTGGAAATTGATGTTTTTGATTGGTTCCAAACGCTAGCGGAAGATGTGGTGACGAAGACAGTGTTTGGAAGTAGCTATGAAGATGGTAAAGCCATTTTCAAGCTTCAAACTCAACAAATGATATTAGCTTCCGAAGCTTTCCAAAAGGTCTTCATTCCTGGGTACAGATTTTTGCCGACAAGAACCAATATTAATTCGTGGAAATTAGACAAGGAAATAAGAAAATCATTGATGAAATTGATCGAGGGTCGAAAGGGGAATTCACAGAAAATTTGGGCAATGGATGAAAAAGCGCCAAAAGATTTATTAGGGCTCATGATTCAAGCTTCCAACTCATCATCTTCTTCTTCTTCATTACACACTAATATTTCCGTCCACGACATCGTTGAAGAGTGCAAAACCTTCTTCTTTGCTGGCAAACAGACCACTTCCAATCTGCTGACGTGGACTACTGTCTTGCTCGCAATGCATCCACAGTGGCAAATTCAGGCACGTGACGAGGTTCTTAGCGTGTGCGGTCCACGTGCTCTCCCCTCCACAGATGACCTTTCTAAGTTCAAGATCCTGAGCATGATACTGAACGAGTCCTTACGATTGTACCCTCCGACGGTGGCTACGATTCGACGTGCAAAGACAGTTGTCGAGCTAAGAGGGCGGATGATCCCACGGGGGACAGAGTTCTTAATCCCAATTCTAGCGGTTCATCATGATCAAAATATTTGGGGGAACGATGCGAGCGAGTTCAATCCGGGGCGATTCTCAGAAGGCGTGGGCCACGCTGGAAACCATCCAGCCGGGTTCATTCCATTTGGACATGGTCTTCGTGCTTGCATTGGCAAGAACTTGGCTCTTCTGCAAGCAAAGTTGGCAATAGCAATTATAGTTCAACGATTCTCATTTCGATTGGCTCCTTCTTATCAGCATGCACCAACGGTGTTGATGCTTTTGTATCCGCAATACGGAGCTCCGGTTGTGTTTCGAAAGATAGAGACCCCAAGGGATTAA 1605 48.16 MNHTPPPPLDSIKIPFLCALLFILAVKMGAALWWKPRRIEAHFLRQGIRGPPYRFFIGNFKELDSMMLAATSRPMPNFSHNILPRVLSFYHHWKKIYGSTFLIWFGPIVRVAVSDPDMIRDILTTNSEFYEKNEAHPLIKKLEGDGLLTLKDQKWALHRKIISPVFNMENLKLLIPVVEESVVDMVEKWSAMAGGGASDEVEIDVFDWFQTLAEDVVTKTVFGSSYEDGKAIFKLQTQQMILASEAFQKVFIPGYRFLPTRTNINSWKLDKEIRKSLMKLIEGRKGNSQKIWAMDEKAPKDLLGLMIQASNSSSSSSSLHTNISVHDIVEECKTFFFAGKQTTSNLLTWTTVLLAMHPQWQIQARDEVLSVCGPRALPSTDDLSKFKILSMILNESLRLYPPTVATIRRAKTVVELRGRMIPRGTEFLIPILAVHHDQNIWGNDASEFNPGRFSEGVGHAGNHPAGFIPFGHGLRACIGKNLALLQAKLAIAIIVQRFSFRLAPSYQHAPTVLMLLYPQYGAPVVFRKIETPRD 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2717443 2719695 + CmoCh11G005560.1 Cmo11g00556 391175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00556 534 Pfam Cytochrome P450 87 507 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506|GO:0016705
Cmo11g00556 534 PANTHER CYTOCHROMEA2 16 524 - -
Cmo11g00556 534 PANTHER CYTOCHROME P450 FAMILY MEMBER 16 524 - -
Cmo11g00556 534 PRINTS E-class P450 group I signature 94 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 PRINTS E-class P450 group I signature 212 230 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 PRINTS E-class P450 group I signature 327 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 PRINTS E-class P450 group I signature 347 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 Gene3D Cytochrome P450 33 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 PRINTS P450 superfamily signature 338 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 PRINTS P450 superfamily signature 391 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 PRINTS P450 superfamily signature 477 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00556 534 SUPERFAMILY Cytochrome P450 80 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00556 Cmo-Chr11:2717443 Cmo12g01254 Cmo-Chr12:11107044 0 dispersed
Cmo10g00614 Cmo-Chr10:2779472 Cmo11g00556 Cmo-Chr11:2717443 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00556 K15639 - csv:101213466 853.973