Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00584 ATGCCCTACATGCATATGGAGCCAGAAGAGAAACATGTGATACCATCTTCTCAAATGGTGTTAAAATCCCTACATGCCTCAAAGGATGATGAAAAGACTAGTTTATGGAAAAGGAAAGGAAAAAGGAGAGCGAAAGGATTTACCATGGAAGAACTGAAACAAGAGGAGCTTGATCCAAATCTGGAGTTTCCCTCTTCTTCTTCCTGCAAAAGCTTAACATTTCCAAGAAGGCCAGACTTTGGCTCGCTGGGGACTAAATGCTTGGTTAAAGCCAACCACTTCCTAGCCAAAATACCTGAATCAGACATAAGCCATTATAATGTTAAGATAACCCCAGAAGTTACTTCTCGTAAACTGAAGAAGAACATACTGACCGAGCTGGTCAAACATTATAGAAGCACAGAGCTGGGGATGCGACTGCCAGTTTACGATGGAGGAAGCAACCTGTACACGGCCGGATTGCTGCCTTTCACATCAAAAGAGTTCACTGTCATTTTGGCTGATGAGGAAGAGGGAGCAGCCACTCCCAGGGAACGAGAATTTAAAGTGCAAATAAAGTTTGTAACTTTAGCTAGCATGCACCAGTTACGAGAATTATTTGCTGGTAAACAAGTTAAAAACCCTCAAGAAGCTTTGACCATCATTGACATCGTCTTGAGGGAGCTTCATGCTCAAAGATATATATCAGTTGGGCGATTCTTTTGCTCTCCTTGCATTAAGAAACCTCAGCATGTTGGGGGTGGTTTGCAAGTTTGGCGTGGCTTCTATCAAAGCATCCGACCTACTCAAATGGGATTGTCACTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTTGCTCAAATCTTAAACAAAGATGTGTATTCAAGACCACTATCTGATGCTGATCGTATCAAGATTAAAAAAGTGCTCAGAGGTGTAAAAGTTGAAGTTACACACAGAGGAAATGTGCGAAGGAAATACCGAATTTCAGGACTAACAACACAGCCTACAAGAGAGCTAATCTTCCCTCTTGATGAGCAAATGAACATGAAATCTGTAGTTGAATACTTCCAAGAGGTGTATGGATATACCATTCAGTACACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAACTATCTACCCATGGAGGCATGTAAGATTCTTAAGGGGCAGAGATACACAAAAGGACTGAATGAAAAGCAAATAGCTTCCTTGTTGAAGGTTTCATGCCAAAGACCATCTGATCAAGAAATGGACATTTTACAGACTGTTCATCAGAATGCATACGAGGAAGATCCATATGCAAAAGAGTTCGGAATCAGCATCGACACCAAGCTTACATCGGTTGAAGCACGAGTCCTCCCATCTCCATGGCTAAAATTTCATGACACGGGAAAAGAAAGGGAACATCTGCCTCAAGTTGGTCAATGGAATATGATGAATAAGAAAGTAATAAATGGAAGTGTTGTAAGATATTGGGCTTGTATCAATTTCTCGCGCAACGTCCAAGAGAGCATAGCTTGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAGTCTCCGGCATGGAATTTAACCCAGATCCTGCAATTCCTATATACTCCGCAAGACCAGATCAAGTGAAAAAGGCCTTAAAATATGTATGTAATGCAGTTTATACCAAACATGAAGGAATGGAGTTAGAGTTACTGATAGCCATTCTTCCGGACAACAACGGCTCTTTATATGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCGCAGTGTTGTCTAACAAAGCATGTTTTCAAGAAGAGCAGACAGTATTTGGCGAATGTGTCACTTAAGATCAACGTCAAGATGGGTGGAAGAAACACTGTTCTGTTAGATGCTTTGCGGTCAAGAATTCCACTAGTCAGTGACATACCAACAATAATCTTTGGAGCTGATGTCACCCATCCAGAATCTGGAGAGAATTCTCTTCCATCGATAGCTGCCGTTGTGGCTTCCCAAGATTGGCCAGAAGTTACAAAATATGCTGGATTGGTATGTGCTCAGCCTCACCGAGAAGAACTGATTCAAGATTTATTCAAAACATGGAAAGATCCTCATCGCGGCACAGTTGCCGGGGGTATGATAAGGGAGCTCTTGCTTTCATTTAAGAAGGCCACTGGACAAAAACCATTAAGGATAATATTCTATAGGGATGGTGTCAGTGAGGGTCAGTTCTACCAAGTTCTACTGCACGAACTTGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTACCAACCTCCAGTAACTTTTATCATTGTCCAAAAGCGACATCATACCAGACTTTTCACATCCAATCACAGTGATAGGAGCAGCACTGACAAGAGTGGTAATATTTTACCAGGTACCGTCGTGGATTCAAAGATATGTCATCCGACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCCGCTCATTATCATGTTCTTTGGGATGAGAATAATTTCAGTGCTGATGACATTCAATCTCTGACTAATAACCTCTGTTACACATATGCTCGGTGCACAAGATCAGTCTCAGTAGTGCCTCCAGCATACTACGCTCATTTAGCGGCGTATAGAGCTCGATTCTACGTGGAACCCGACGCCCAGGAGAATGCGAAAAGGTGCTGCACTCGAACCACAAATGGGTCCAGCGTCCGGCCTTTGCCTGCACTGAAAGAGAGAGTGAAAAATGTGATGTTCTATTGTTGA 2784 42.53 MPYMHMEPEEKHVIPSSQMVLKSLHASKDDEKTSLWKRKGKRRAKGFTMEELKQEELDPNLEFPSSSSCKSLTFPRRPDFGSLGTKCLVKANHFLAKIPESDISHYNVKITPEVTSRKLKKNILTELVKHYRSTELGMRLPVYDGGSNLYTAGLLPFTSKEFTVILADEEEGAATPREREFKVQIKFVTLASMHQLRELFAGKQVKNPQEALTIIDIVLRELHAQRYISVGRFFCSPCIKKPQHVGGGLQVWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQILNKDVYSRPLSDADRIKIKKVLRGVKVEVTHRGNVRRKYRISGLTTQPTRELIFPLDEQMNMKSVVEYFQEVYGYTIQYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQIASLLKVSCQRPSDQEMDILQTVHQNAYEEDPYAKEFGISIDTKLTSVEARVLPSPWLKFHDTGKEREHLPQVGQWNMMNKKVINGSVVRYWACINFSRNVQESIACGFCQQLVQMCQVSGMEFNPDPAIPIYSARPDQVKKALKYVCNAVYTKHEGMELELLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGENSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFTSNHSDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADDIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDAQENAKRCCTRTTNGSSVRPLPALKERVKNVMFYC 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2816968 2825792 - CmoCh11G005840.1 Cmo11g00584 391203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00584 927 SMART DUF1785_2 228 280 IPR014811 -
Cmo11g00584 927 CDD PAZ_argonaute_like 280 394 - -
Cmo11g00584 927 Pfam Piwi domain 570 888 IPR003165 GO:0003676
Cmo11g00584 927 Pfam Argonaute linker 1 domain 229 279 IPR014811 -
Cmo11g00584 927 Pfam Mid domain of argonaute 478 555 IPR032473 -
Cmo11g00584 927 ProSiteProfiles PAZ domain profile. 281 395 IPR003100 GO:0005515
Cmo11g00584 927 Pfam Argonaute linker 2 domain 424 467 IPR032472 -
Cmo11g00584 927 ProSiteProfiles Piwi domain profile. 569 890 IPR003165 GO:0003676
Cmo11g00584 927 SUPERFAMILY Ribonuclease H-like 566 891 IPR012337 -
Cmo11g00584 927 SMART PAZ_2_a_3 285 417 IPR003100 GO:0005515
Cmo11g00584 927 PANTHER PROTEIN ARGONAUTE 10 27 926 - -
Cmo11g00584 927 SMART Piwi_a_2 569 890 IPR003165 GO:0003676
Cmo11g00584 927 Gene3D - 638 927 IPR036397 GO:0003676
Cmo11g00584 927 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 27 926 - -
Cmo11g00584 927 Pfam PAZ domain 285 410 IPR003100 GO:0005515
Cmo11g00584 927 CDD Piwi_ago-like 439 888 IPR045246 -
Cmo11g00584 927 Pfam N-terminal domain of argonaute 86 219 IPR032474 -
Cmo11g00584 927 SUPERFAMILY PAZ domain 275 435 IPR036085 GO:0005515
Cmo11g00584 927 Gene3D - 459 632 - -
Cmo11g00584 927 Gene3D paz domain 274 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00584 Cmo-Chr11:2816968 Cmo13g01159 Cmo-Chr13:9330678 0 dispersed
Cmo11g00584 Cmo-Chr11:2816968 Cmo14g01794 Cmo-Chr14:13773102 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00584 K11593 - csv:101213206 1744.17