Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00588 ATGGCTGCAGTTTTCCGTTCTAGAAGCCGCATCCCTGTTTTCTTAATTTTACTTCACCTTTTTCTTCTTCTTCATTCAGTTCAATCGGAGCCGTCCGCCGACAAGGAAGCACTTCTCGATTTCTTGAATCAAATCCCCCATGAGAATCGCCTTCAATGGAATGCATCGGCCTCTGCTTGTACTTGGGTTGGAGTTAGCTGTGATGTCAATCAGTCGTTTGTTTTTGCTCTCCGGTTGCCGGGTGTTGGACTTGTCGGCCCCATTCCGGCGAATACACTCGGCCGCTTGAATAGGCTTCGAGTTCTGAGTCTCCGGTCTAATAAAATCTCTGGGGAGTTGCCGGCGGATTTTTCGAATTTGACATTTCTTCGGAGTCTTTATCTTCAGGATAACGAGCTTTCTGGTGAACTACCGGCGAGTGTGACTCAGTTGACTCGGTTGAATCGTCTGGATCTCTCGTCCAACAATTTCACTGGTTCGATTCCATTTTCGATCAATAACTTGACCCATTTGAGCGGGCTTTTTCTGGAGAATAATGGGTTTACGGGCTCTTTGCCGAGTATTCCAGCGAGTAATTTAACGAGCTTCAATGTCTCGAATAACCAGCTTAATGGATCCATTCCCGAAACCCTTTCGAAATTCTCTGCTGCCTCTTTCGCTGGGAATTTAGCGCTCTGCGGTGGTCCATTGCCGTCATGCAACCCGTTTTTTCCCTCCCCTGCTCCGTCGCCGACGTCCGCCGTGAAACCCCCAGAAATTCCCGTCGAGTTGAAGTCAAAAAAGCTCTCCATCGCTGCCATTGTCGGAATAGTCGTCGGCGCTGCTTTCGTTGCGTTTCTGTTGCTGCTTTTACTCATTTTTTGCCTCCGGAGGCGCCAGAGTCGGCAGCCGGCGAAGCCATCGAGTACGGTGGTTACTGCTCGATCTGTGCCAGCGGAGGCCGGCACATCGTCTTCCAAAGACGACATCACCGGCGGGTCTGTGGAAGCGGAGAAAAACAAATTAGTGTTCTTCGAAGGTGGGGTTTACAGTTTCGATTTGGAGGATTTGTTGAGGGCTTCAGCGGAGGTTTTGGGAAAAGGAAGTGTCGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTCGTCGTCAAGAGATTGAAAGATGTCGTAATGACGAAGCAGGAATTCGAAACGCAAATAGAAGCTTTGGGAAATGTAAAACATGAAAATGTGGTTCCTCTCAGAGCTTTCTACTTTTCCAGAGACGAGAAATTACTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCCGCTTCACTTCACGGAAGCAGAGGATCCGGCCGTACGCCACTTAACTGGGACAACCGGATGAAAATCGCGTTACACGCAGCGAGAGGACTGGCTCACTTACACGTGTCGGGAAAACTCGTCCACGGCAACGTCAAATCGTCGAACATCCTCCTCCACCCCAACTACGACGCCGCCGTTTCCGACTACGGCCTCAACCCTCTCTTCGGCGCCACTACGCCGCCGAACCGTATTGCCGGCTACCGCGCGCCGGAGGTTGTCGAAACTCGAAAGGTCACCTTCAAGTCCGACGTGTACAGTTTTGGCGTCTTGCTGTTGGAGCTTTTGACCGGAAAATCCCCAATTCAGGCGTCGTTGGGCGAAGAAGGGATTGATCTTCCCCGGTGGGTCCAATCAGTAGTCCGAGAGGAATGGACAGCGGAGGTTTTTGATGTGGAATTGATGAGGTACCACAATATCGAAGAGGAAATGGTTCAGTTATTACAAATTGCGATGGCTTGTGTCGCCACAGTGCCGGACCAGCGGCCGTCAATGCAGGAAGTGGTTCGAATGATCGAGGACTTGAACCGTGTAGAGACCGACGACGGCTTACGACCATCATCCGATGACCCGTCAAAAGGATCGGAAGGGCACACGCCGCCGCAGGAGTCCAGAGCCACCCCTCCCGGAATCAGCGGAGCAGTGTAG 1983 51.69 MAAVFRSRSRIPVFLILLHLFLLLHSVQSEPSADKEALLDFLNQIPHENRLQWNASASACTWVGVSCDVNQSFVFALRLPGVGLVGPIPANTLGRLNRLRVLSLRSNKISGELPADFSNLTFLRSLYLQDNELSGELPASVTQLTRLNRLDLSSNNFTGSIPFSINNLTHLSGLFLENNGFTGSLPSIPASNLTSFNVSNNQLNGSIPETLSKFSAASFAGNLALCGGPLPSCNPFFPSPAPSPTSAVKPPEIPVELKSKKLSIAAIVGIVVGAAFVAFLLLLLLIFCLRRRQSRQPAKPSSTVVTARSVPAEAGTSSSKDDITGGSVEAEKNKLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKQEFETQIEALGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSASLHGSRGSGRTPLNWDNRMKIALHAARGLAHLHVSGKLVHGNVKSSNILLHPNYDAAVSDYGLNPLFGATTPPNRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPIQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMQEVVRMIEDLNRVETDDGLRPSSDDPSKGSEGHTPPQESRATPPGISGAV 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2841086 2844163 - CmoCh11G005880.1 Cmo11g00588 391207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00588 660 Gene3D Phosphorylase Kinase; domain 1 320 426 - -
Cmo11g00588 660 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Cmo11g00588 660 Pfam Leucine Rich Repeat 98 120 IPR001611 GO:0005515
Cmo11g00588 660 Pfam Protein kinase domain 355 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00588 660 MobiDBLite consensus disorder prediction 621 637 - -
Cmo11g00588 660 Gene3D Transferase(Phosphotransferase) domain 1 427 633 - -
Cmo11g00588 660 SUPERFAMILY Protein kinase-like (PK-like) 356 617 IPR011009 -
Cmo11g00588 660 PANTHER OS05G0588300 PROTEIN 17 638 - -
Cmo11g00588 660 Gene3D Ribonuclease Inhibitor 190 236 IPR032675 -
Cmo11g00588 660 MobiDBLite consensus disorder prediction 621 660 - -
Cmo11g00588 660 SUPERFAMILY L domain-like 36 214 - -
Cmo11g00588 660 CDD STKc_IRAK 358 620 - -
Cmo11g00588 660 MobiDBLite consensus disorder prediction 299 325 - -
Cmo11g00588 660 MobiDBLite consensus disorder prediction 299 324 - -
Cmo11g00588 660 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Cmo11g00588 660 ProSiteProfiles Protein kinase domain profile. 352 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00588 660 PANTHER OS05G0480400 PROTEIN 17 638 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01333 Cmo11g00588 CCT
Cmo11g00588 Cmo12g01258 CCT
Cmo10g00631 Cmo11g00588 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00588 Cmo-Chr11:2841086 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo18g00062 Cmo-Chr18:402885 Cmo11g00588 Cmo-Chr11:2841086 0 dispersed
Cmo18g01016 Cmo-Chr18:10990716 Cmo11g00588 Cmo-Chr11:2841086 1.58E-170 dispersed
Cmo15g00334 Cmo-Chr15:1546633 Cmo11g00588 Cmo-Chr11:2841086 1.46E-96 transposed
Cmo10g00631 Cmo-Chr10:2860458 Cmo11g00588 Cmo-Chr11:2841086 0 wgd
Cmo11g00588 Cmo-Chr11:2841086 Cmo12g01258 Cmo-Chr12:11166731 0 wgd
Cmo11g00588 Cmo-Chr11:2841086 Cmo05g01333 Cmo-Chr5:10335096 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74658 PF00069 Pkinase 2.80E-36 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00588 - - csv:101209965 1063.52