Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00619 ATGTCGTCTCCTGCTCCCATCTCGCCGCCGGGGACTAACTCGACCTCACCCCCACCACCGACCACGGATGCACCACCTCCAGCATCTCCATCTCTCTCACCGCCTCCGCCTGCTTCATCGCCGCCGCCTCCGAACAGTACCACTCCATCTCCGCCTACTTCTTCTCCTTCCCCGCCGGACGTGCCTTCGAGCTCTCCCCCGCCGCCGCCTACCGACTCGACGGCTCCACCGCAACTTCCGAGTCCGACGCCGCCATCCAATTCTAGTACACCTGTGAATCCCGGAGGAAATCAGGCTCCGCCGTCGGAAACGGCGCCATCTCCCTCATCATCGTCGGGAGTTTCGGCGGGACTTGTGTCTGGGGTTGTCGTTGGAGTGTTAGTGGTGGTTGTAGCGTTGATTGCTATGTGGTTTTATTTAAGAAAGAAGAGGAGACGCGACGAGGAGGCGTACTACCGGCCACCGCATCCGCCTGCGCCACCGGCGGCGTTTAAAGACGGCCAATACGGTCCCCAACAGCACCATTGGCAATCACATCCGCCGCCGCCAGGGGATCATATCGCGGGGACAGTACCAAAGCCGTCTCCTCCGCCAGCATCACGGCCACCGCCGTCACCCCCGATTATAAACAGTAGCGGAGGGTCTGGATCTAATTATTCAGGGTCTGAAAATTCGTTGGCTCCAGCTCCATCTTCTGTTCCCTTGGGGTTCTCACAGAGCAGTTTCACTTACGAAGAATTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAATCTCCTCGGACAAGGTGGGTTTGGTTATGTGCATAAAGGAGTTCTTCCTAACGGAAAGGAAGTGGCAGTGAAACAACTTAAAGCTGGAAGCGGACAAGGAGAGCGTGAATTCCAAGCAGAAGTTGAAATTATCAGCCGAGTTCATCATAGGCATCTTGTTTCTTTGGTCGGATATTGCATCACTGGCTCCCAAAGATTGCTGGTTTATGAATTCGTTCCCAACAACACATTGGAGTTTCACTTGCACGGGAAAGGACGACCTACCATGGATTGGCCAACCAGGCTCAAAATCGCTTTGGGATCTGCCAAGGGATTGGCCTACCTTCATGAGGACTGCAATCCTAAGATCATTCATCGTGACATCAAAGCAGCAAACATACTTTTAGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTTGCCAAGTTGTCTTCTGATGTTAATACCCATGTTTCAACTCGAGTCATGGGCACTTTCGGATATCTTGCTCCTGAATACGCTTCAAGTGGGAAACTAACTGAGAAATCAGACGTGTTCTCCTATGGAGTAATGCTTCTGGAGTTGATTACTGGACGCAGACCTGTTGATCCAACTCAATCATTCATGGACGATGGATTGCTCGATTGGGCAAGGCCATTACTACTTCGGGCAACAGAAAATGGAAACTACGACGGTTTGGTAGATCCAAAGCTGCGAGATAACCACGACCACAACGAGATGGCGCGCATGGTTGCTTGCGCTGCGGCCTGTGTGCGTCATTCGGCGAGGCGTCGACCACGGATGAGTCAAGTGGTTCATGCTCTTGAAGGAGAAGCCTCGCTTTCTGATCTGAACGAAGGAATCCGACCTGGACATAGCACTGTGTACAGTTCTTATGGAAGCTCCGACTACGACACGGCTCAGTACAACGAGGATCTGAAGAAGTTCAGGAAGATGGCGTTGGCGAGCCAGGAGTATGGCAGCGAGTATAGCGAGCCGACGAGTGAGTATGGGCTGTACCCATCTGGGTCGAGTGGCGATGGGCAAACAACGAGGGAAATGGAGACGAGAACGATGAAGAAAGAAAGTGGAGGATTGATTTAG 1860 52.63 MSSPAPISPPGTNSTSPPPPTTDAPPPASPSLSPPPPASSPPPPNSTTPSPPTSSPSPPDVPSSSPPPPPTDSTAPPQLPSPTPPSNSSTPVNPGGNQAPPSETAPSPSSSSGVSAGLVSGVVVGVLVVVVALIAMWFYLRKKRRRDEEAYYRPPHPPAPPAAFKDGQYGPQQHHWQSHPPPPGDHIAGTVPKPSPPPASRPPPSPPIINSSGGSGSNYSGSENSLAPAPSSVPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDPTQSFMDDGLLDWARPLLLRATENGNYDGLVDPKLRDNHDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSTVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMETRTMKKESGGLI 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2957148 2959763 + CmoCh11G006190.1 Cmo11g00619 391238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00619 619 MobiDBLite consensus disorder prediction 1 115 - -
Cmo11g00619 619 Pfam Protein tyrosine and serine/threonine kinase 258 527 IPR001245 GO:0004672|GO:0006468
Cmo11g00619 619 Gene3D Transferase(Phosphotransferase) domain 1 330 539 - -
Cmo11g00619 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Cmo11g00619 619 SUPERFAMILY Protein kinase-like (PK-like) 230 527 IPR011009 -
Cmo11g00619 619 SMART serkin_6 254 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00619 619 MobiDBLite consensus disorder prediction 210 231 - -
Cmo11g00619 619 MobiDBLite consensus disorder prediction 582 619 - -
Cmo11g00619 619 MobiDBLite consensus disorder prediction 582 604 - -
Cmo11g00619 619 Gene3D Phosphorylase Kinase; domain 1 227 329 - -
Cmo11g00619 619 ProSiteProfiles Protein kinase domain profile. 254 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00619 619 ProSitePatterns Protein kinases ATP-binding region signature. 260 282 IPR017441 GO:0005524
Cmo11g00619 619 MobiDBLite consensus disorder prediction 90 115 - -
Cmo11g00619 619 MobiDBLite consensus disorder prediction 1 89 - -
Cmo11g00619 619 MobiDBLite consensus disorder prediction 148 231 - -
Cmo11g00619 619 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 12 607 - -
Cmo11g00619 619 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 12 607 - -
Cmo11g00619 619 MobiDBLite consensus disorder prediction 185 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00619 Cmo-Chr11:2957148 Cmo18g00802 Cmo-Chr18:9482250 3.42E-159 dispersed
Cmo14g01393 Cmo-Chr14:11465840 Cmo11g00619 Cmo-Chr11:2957148 5.10E-93 dispersed
Cmo10g00657 Cmo-Chr10:3018920 Cmo11g00619 Cmo-Chr11:2957148 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74659 PF07714 PK_Tyr_Ser-Thr 1.10E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00619 - - csv:101222748 830.091