Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00626 ATGGACGATTTACCCCCGCAAAATGCTCAAACTGGTAGTGAGGAACCGGATAGCGTGGTTGCATTTGATGTTACTGCTAAGAAACTAGTTAGACAGCTGGATTTTGCGGAGTTTGGTGGTGCAGTCTCACCAGCGCTCCCTCATTTTCAGTCTCAGTCTCGTTGTCAATCAGAGTCACCAGCCGTGATGGTGGTGCAGAGTCCGTCGCAGCCGAAGTCCCCACAACATTTGATGGTTTTGCCCGTCGGAACACAATCGCCTCATCCTGTGGCTGTGAGGTACTGTGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGTGCAAATTGCTATAACAATGTCGAGAATGAAGTTTCTAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAGATAGCTAGCAGCCCGCATGGACCACGAGAAAGCAGGGATGAGATTGGAGAGGTTGTAATGCTGGGAAAGCACTACAAAGGATGCCATTGCAAGAAATCAAGTTGCTTAAAGAAGTATTGCGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGACGAGAGACAAGCACTTCTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTTCCACTTCAAAGAAAAGAAAAGGCCCAGAGCTTTGCTTTGGCCCTACAGGGAAGGATACCCCCTGCAACAGCATAGCACAATTTCATCAGGCTAATAATATGTTGTCTTCTGGCGCATCTACGTCATCTCCCCTCCCTGTTGCTCATGCTGGCAGCCCTGCAGCACCGGGACCTTCAAAGTTTTCATTCAGGTCCTTATTGGCAGACCTCATCCAGATGAACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGCGAAGCTTCCAAGAATATAGCAGAACAAAGAATTGCTGAGAAGCAGATAAATGATCCACTGCAGATTTCACGTGCTTCAACTGGAGATAGGTCACAGGACCAGGAAGCAGATGCGAAAGCCGCAGATGTCGAGTGTGGAAGTTTAAACCAAGGTGATAGAATTGTACATCATAATTCCAATTCAGATGGTTCGGACACGACAAGGGCAAGGTCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAAAAGGATACCATGTTCACGGGAGCTGCTCTAGCTCATGGGTTGGCAGGCCATGGTTGCAACACATCATCACATATGCTTGATAAGTCTGTATCAGAAGTCTACATAGAGCAGGAACGGATTGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCCTGGAGAGATAAAAGGGTCTGGAAATGAAACGCTGGTTAAGAAATCTGTGGAAGACCTTGTTAATTTAGAGGTGGAGGAGAGAAATGGGAAAAGGGTTCAGAGGGATAAAAACGTTAGGAATAGCTCTGGTTCTGCTAATGGAATGAAAACGGGTTCTGGGATTTCTAATATCAAGTCTATAAGTGACAATAGTTCACTGAAAGTTTCTGGTGGTTCAAGGAATGGTGAGAAGGTTAAAGAAAAGAGCATGCGAAAACAGGTGGTAGAGGAGAAGGATAAATTGTCTAAAGGGAGTAATGAAATCCCATTTAGAGCCAACTTGGATATGTGCTCCAAGATGGGGGATTTCATGGGGGCAATTAAATTGTATGAATGGACTCAAAGAGAAGGAATTAAGCTGGGGCAATATCATTATGCTGTCATTATGTATCTTTGTTCCTCAGCTGCTTTAGGTGTTATTCAACCCGCTAAAAGTGGTCGTGGTAACCGAACTTTGAGTTCATTAGCTTTGTCTGAGGTGGGTTCTTATGAAAATCCCATTACACTTGGTGAACAGCATGACAATAAGGAGAATATAGTTCAATCTACAAATATTCTGGAAGATGAAGATTTAAAAAGATATGCCCTCGAGAAGGGATTCGAGATCTATGAGAAAATGCGTGCTGAAAATATCCCGATGAACGAAGCAACATTGACATCTGTGGCTCGAATGGCAATGTCTGTGGGCGATGGTGATATGGCGTTTGATATAGTGAAGCAGATGAAGCCATTAGGACTTAATCCAAGATTGCGCTCTTATGGCCCTGCGCTTTCTACTTTCTGCAATAAAGGGGAGATAGATAAAGCATTTTCAGTTGAGAAGCACATGTTGGAGCATGGTGTCTATCCGGAAGAGCCCGAGTTGGCAGTGCTTTTAAGAGTAAGTATAAACGCAAGTAACGCCGAAAAGGTGTACTATTTGTTGCATAAATTAAGAACAAGTGTAAGACAAGTCTCAACCTCTACTGCAGATCTTATTACTACCTGGTTTAAGAGCAAAGATGCCACAAGAGTGGGAAAAGCAAAACTGGATAAAGTGAAAATAAGGGAAGCTATAGAAAATGGCGGTGGAGGTTGGCATGGATTGGGATGGTTGGGAAGAGGAAAATGGAATGTTTCATCTACAAATGTTGGAAAGGATGGCATGTGTAAAGCCTGTGGGGAAAAATTGATAACAATTGATCTTGATCCTATTGAAACTGAGAATTTTGCTGAATCTGTTGCAGCCATAGCCACAAAAAGAGAGAAAAATTCAAGTTTTCAGAAATTTCAAAAATGGCTTGAACATTATGGACCATTTGAAGCAGTGATAGATGCTGCTAATGTTGGCCTGTTTATGGAAAGAAACTTCACACCATCTAGAGTCAATTTAATAGCCAATGGAATACGGCAGAAGCTTTCTTCAAAGAAGTGGCCTCTGATTGTATTGCATAACAGGCGAATTACTGGACGTAAGATGAATGAAGCAGTCAATAGAACATTGATTGAGAAGTGGAAAAATGGCAATGCACTGTATGCAACGCCTACTGGATCAAATGATGATTGGAATCAGAAAAAGGCCATTGGCATGTTCCCATTGCATCAGAGCATAGTTACGAAGAAGATAGAGAATGGCTATGTATTACAAGAGGGAAATCACATTTACACATGA 3093 42.61 MDDLPPQNAQTGSEEPDSVVAFDVTAKKLVRQLDFAEFGGAVSPALPHFQSQSRCQSESPAVMVVQSPSQPKSPQHLMVLPVGTQSPHPVAVRYCECFASGIYCDGCNCANCYNNVENEVSRREAVETTLERNPNAFRPKIASSPHGPRESRDEIGEVVMLGKHYKGCHCKKSSCLKKYCECFQANILCSENCKCMDCKNFEGSDERQALLHGDHVNNMAYIQQAANAAITGAIGSSGYACLSTSKKRKGPELCFGPTGKDTPCNSIAQFHQANNMLSSGASTSSPLPVAHAGSPAAPGPSKFSFRSLLADLIQMNDLKELCSVLVVLSSEASKNIAEQRIAEKQINDPLQISRASTGDRSQDQEADAKAADVECGSLNQGDRIVHHNSNSDGSDTTRARSMSPGTLALMCDEKDTMFTGAALAHGLAGHGCNTSSHMLDKSVSEVYIEQERIVLTKFRDCLNKLITPGEIKGSGNETLVKKSVEDLVNLEVEERNGKRVQRDKNVRNSSGSANGMKTGSGISNIKSISDNSSLKVSGGSRNGEKVKEKSMRKQVVEEKDKLSKGSNEIPFRANLDMCSKMGDFMGAIKLYEWTQREGIKLGQYHYAVIMYLCSSAALGVIQPAKSGRGNRTLSSLALSEVGSYENPITLGEQHDNKENIVQSTNILEDEDLKRYALEKGFEIYEKMRAENIPMNEATLTSVARMAMSVGDGDMAFDIVKQMKPLGLNPRLRSYGPALSTFCNKGEIDKAFSVEKHMLEHGVYPEEPELAVLLRVSINASNAEKVYYLLHKLRTSVRQVSTSTADLITTWFKSKDATRVGKAKLDKVKIREAIENGGGGWHGLGWLGRGKWNVSSTNVGKDGMCKACGEKLITIDLDPIETENFAESVAAIATKREKNSSFQKFQKWLEHYGPFEAVIDAANVGLFMERNFTPSRVNLIANGIRQKLSSKKWPLIVLHNRRITGRKMNEAVNRTLIEKWKNGNALYATPTGSNDDWNQKKAIGMFPLHQSIVTKKIENGYVLQEGNHIYT 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2988636 2999182 - CmoCh11G006260.1 Cmo11g00626 391245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 130 152 - -
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 506 539 - -
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 541 561 - -
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 350 401 - -
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 495 561 - -
Cmo11g00626 1030 Pfam Pentacotripeptide-repeat region of PRORP 561 640 IPR033443 -
Cmo11g00626 1030 Pfam Pentacotripeptide-repeat region of PRORP 669 817 IPR033443 -
Cmo11g00626 1030 Pfam Protein-only RNase P 859 996 IPR031595 -
Cmo11g00626 1030 Gene3D Tetratricopeptide repeat domain 566 908 IPR011990 GO:0005515
Cmo11g00626 1030 PANTHER UNCHARACTERIZED 514 997 - -
Cmo11g00626 1030 ProSiteProfiles CRC domain profile. 83 203 IPR005172 -
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 382 401 - -
Cmo11g00626 1030 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 166 200 IPR005172 -
Cmo11g00626 1030 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 730 764 IPR002885 -
Cmo11g00626 1030 PANTHER OS02G0273800 PROTEIN 514 997 - -
Cmo11g00626 1030 SMART CXC_2 163 204 IPR033467 -
Cmo11g00626 1030 SMART CXC_2 93 118 IPR033467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00626 K18213 PRORP; proteinaceous RNase P [EC:3.1.26.5] - csv:101210714 809.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00668 Cmo11g00626 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00669 Cmo-Chr10:3059747 Cmo11g00626 Cmo-Chr11:2988636 0 dispersed
Cmo10g00854 Cmo-Chr10:4039201 Cmo11g00626 Cmo-Chr11:2988636 2.28E-104 dispersed
Cmo11g00626 Cmo-Chr11:2988636 Cmo17g00212 Cmo-Chr17:1245799 1.08E-07 dispersed
Cmo14g01773 Cmo-Chr14:13699108 Cmo11g00626 Cmo-Chr11:2988636 5.98E-08 dispersed
Cmo10g00668 Cmo-Chr10:3055117 Cmo11g00626 Cmo-Chr11:2988636 0 wgd
Cmo11g00626 Cmo-Chr11:2988636 Cmo12g01288 Cmo-Chr12:11365188 3.43E-102 wgd
Cmo11g00626 Cmo-Chr11:2988636 Cmo05g01354 Cmo-Chr5:10498359 4.09E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g320 . . . . . . . Bma11g00521 Cmo10g00668 Cmo11g00626 . . . . Sed08g0786 Cpe04g01123 Cpe18g00422 Bhi02g01149 Tan09g1265 Cmetu02g0123 . Hepe09g0772 . . . . . . . . . . . . . Lsi06g00858 . . Cme02g01386 . Blo14g00499 Bda02g00439 . . . . . . . . Cma10g00633 Cma11g00618 . Car11g00498 . . . . . . . . . . . . . . . . . Csa01g01711 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g01354 CST 153 582 CPP Transcription Factor Family AT2G20110 60.2 4.3e-137 485.7
Cmo11g00626 CST 94 474 CPP Transcription Factor Family AT2G20110 54.0 4.9e-104 375.9
Cmo12g01288 CST 131 346 CPP Transcription Factor Family AT2G20110 74.1 3.7e-96 349.7
Cmo12g01288 CST 135 333 CPP Transcription Factor Family AT5G25790 60.5 1.9e-69 260.8
Cmo05g01354 CST 156 589 CPP Transcription Factor Family AT4G29000 61.8 2.6e-146 516.5
Cmo10g00669 . 405 897 CPP Transcription Factor Family AT4G29000 53.2 1.8e-139 493.8
Cmo11g00626 CST 94 514 CPP Transcription Factor Family AT4G29000 55.1 4.1e-120 429.5
Cmo12g01288 CST 140 354 CPP Transcription Factor Family AT4G29000 75.9 8.3e-97 352.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002746 2 4 1 1 1 1 2 1 1 2 1 1 3 2 2 3 1 4 2 1 2 2 2 2 1 2 1 2 4 2 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10565 PF17177 PPR_long 3.10E-55 CL0020 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00626 Cmo_Chr11 FPKM 1.431373 1.539722 10.583975 15.474898 52.941566 37.986225 58.793575 5.918123 5.398328 7.690033