Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00626 ATGGACGATTTACCCCCGCAAAATGCTCAAACTGGTAGTGAGGAACCGGATAGCGTGGTTGCATTTGATGTTACTGCTAAGAAACTAGTTAGACAGCTGGATTTTGCGGAGTTTGGTGGTGCAGTCTCACCAGCGCTCCCTCATTTTCAGTCTCAGTCTCGTTGTCAATCAGAGTCACCAGCCGTGATGGTGGTGCAGAGTCCGTCGCAGCCGAAGTCCCCACAACATTTGATGGTTTTGCCCGTCGGAACACAATCGCCTCATCCTGTGGCTGTGAGGTACTGTGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGTGCAAATTGCTATAACAATGTCGAGAATGAAGTTTCTAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAGATAGCTAGCAGCCCGCATGGACCACGAGAAAGCAGGGATGAGATTGGAGAGGTTGTAATGCTGGGAAAGCACTACAAAGGATGCCATTGCAAGAAATCAAGTTGCTTAAAGAAGTATTGCGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGACGAGAGACAAGCACTTCTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTTCCACTTCAAAGAAAAGAAAAGGCCCAGAGCTTTGCTTTGGCCCTACAGGGAAGGATACCCCCTGCAACAGCATAGCACAATTTCATCAGGCTAATAATATGTTGTCTTCTGGCGCATCTACGTCATCTCCCCTCCCTGTTGCTCATGCTGGCAGCCCTGCAGCACCGGGACCTTCAAAGTTTTCATTCAGGTCCTTATTGGCAGACCTCATCCAGATGAACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGCGAAGCTTCCAAGAATATAGCAGAACAAAGAATTGCTGAGAAGCAGATAAATGATCCACTGCAGATTTCACGTGCTTCAACTGGAGATAGGTCACAGGACCAGGAAGCAGATGCGAAAGCCGCAGATGTCGAGTGTGGAAGTTTAAACCAAGGTGATAGAATTGTACATCATAATTCCAATTCAGATGGTTCGGACACGACAAGGGCAAGGTCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAAAAGGATACCATGTTCACGGGAGCTGCTCTAGCTCATGGGTTGGCAGGCCATGGTTGCAACACATCATCACATATGCTTGATAAGTCTGTATCAGAAGTCTACATAGAGCAGGAACGGATTGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCCTGGAGAGATAAAAGGGTCTGGAAATGAAACGCTGGTTAAGAAATCTGTGGAAGACCTTGTTAATTTAGAGGTGGAGGAGAGAAATGGGAAAAGGGTTCAGAGGGATAAAAACGTTAGGAATAGCTCTGGTTCTGCTAATGGAATGAAAACGGGTTCTGGGATTTCTAATATCAAGTCTATAAGTGACAATAGTTCACTGAAAGTTTCTGGTGGTTCAAGGAATGGTGAGAAGGTTAAAGAAAAGAGCATGCGAAAACAGGTGGTAGAGGAGAAGGATAAATTGTCTAAAGGGAGTAATGAAATCCCATTTAGAGCCAACTTGGATATGTGCTCCAAGATGGGGGATTTCATGGGGGCAATTAAATTGTATGAATGGACTCAAAGAGAAGGAATTAAGCTGGGGCAATATCATTATGCTGTCATTATGTATCTTTGTTCCTCAGCTGCTTTAGGTGTTATTCAACCCGCTAAAAGTGGTCGTGGTAACCGAACTTTGAGTTCATTAGCTTTGTCTGAGGTGGGTTCTTATGAAAATCCCATTACACTTGGTGAACAGCATGACAATAAGGAGAATATAGTTCAATCTACAAATATTCTGGAAGATGAAGATTTAAAAAGATATGCCCTCGAGAAGGGATTCGAGATCTATGAGAAAATGCGTGCTGAAAATATCCCGATGAACGAAGCAACATTGACATCTGTGGCTCGAATGGCAATGTCTGTGGGCGATGGTGATATGGCGTTTGATATAGTGAAGCAGATGAAGCCATTAGGACTTAATCCAAGATTGCGCTCTTATGGCCCTGCGCTTTCTACTTTCTGCAATAAAGGGGAGATAGATAAAGCATTTTCAGTTGAGAAGCACATGTTGGAGCATGGTGTCTATCCGGAAGAGCCCGAGTTGGCAGTGCTTTTAAGAGTAAGTATAAACGCAAGTAACGCCGAAAAGGTGTACTATTTGTTGCATAAATTAAGAACAAGTGTAAGACAAGTCTCAACCTCTACTGCAGATCTTATTACTACCTGGTTTAAGAGCAAAGATGCCACAAGAGTGGGAAAAGCAAAACTGGATAAAGTGAAAATAAGGGAAGCTATAGAAAATGGCGGTGGAGGTTGGCATGGATTGGGATGGTTGGGAAGAGGAAAATGGAATGTTTCATCTACAAATGTTGGAAAGGATGGCATGTGTAAAGCCTGTGGGGAAAAATTGATAACAATTGATCTTGATCCTATTGAAACTGAGAATTTTGCTGAATCTGTTGCAGCCATAGCCACAAAAAGAGAGAAAAATTCAAGTTTTCAGAAATTTCAAAAATGGCTTGAACATTATGGACCATTTGAAGCAGTGATAGATGCTGCTAATGTTGGCCTGTTTATGGAAAGAAACTTCACACCATCTAGAGTCAATTTAATAGCCAATGGAATACGGCAGAAGCTTTCTTCAAAGAAGTGGCCTCTGATTGTATTGCATAACAGGCGAATTACTGGACGTAAGATGAATGAAGCAGTCAATAGAACATTGATTGAGAAGTGGAAAAATGGCAATGCACTGTATGCAACGCCTACTGGATCAAATGATGATTGGAATCAGAAAAAGGCCATTGGCATGTTCCCATTGCATCAGAGCATAGTTACGAAGAAGATAGAGAATGGCTATGTATTACAAGAGGGAAATCACATTTACACATGA 3093 42.61 MDDLPPQNAQTGSEEPDSVVAFDVTAKKLVRQLDFAEFGGAVSPALPHFQSQSRCQSESPAVMVVQSPSQPKSPQHLMVLPVGTQSPHPVAVRYCECFASGIYCDGCNCANCYNNVENEVSRREAVETTLERNPNAFRPKIASSPHGPRESRDEIGEVVMLGKHYKGCHCKKSSCLKKYCECFQANILCSENCKCMDCKNFEGSDERQALLHGDHVNNMAYIQQAANAAITGAIGSSGYACLSTSKKRKGPELCFGPTGKDTPCNSIAQFHQANNMLSSGASTSSPLPVAHAGSPAAPGPSKFSFRSLLADLIQMNDLKELCSVLVVLSSEASKNIAEQRIAEKQINDPLQISRASTGDRSQDQEADAKAADVECGSLNQGDRIVHHNSNSDGSDTTRARSMSPGTLALMCDEKDTMFTGAALAHGLAGHGCNTSSHMLDKSVSEVYIEQERIVLTKFRDCLNKLITPGEIKGSGNETLVKKSVEDLVNLEVEERNGKRVQRDKNVRNSSGSANGMKTGSGISNIKSISDNSSLKVSGGSRNGEKVKEKSMRKQVVEEKDKLSKGSNEIPFRANLDMCSKMGDFMGAIKLYEWTQREGIKLGQYHYAVIMYLCSSAALGVIQPAKSGRGNRTLSSLALSEVGSYENPITLGEQHDNKENIVQSTNILEDEDLKRYALEKGFEIYEKMRAENIPMNEATLTSVARMAMSVGDGDMAFDIVKQMKPLGLNPRLRSYGPALSTFCNKGEIDKAFSVEKHMLEHGVYPEEPELAVLLRVSINASNAEKVYYLLHKLRTSVRQVSTSTADLITTWFKSKDATRVGKAKLDKVKIREAIENGGGGWHGLGWLGRGKWNVSSTNVGKDGMCKACGEKLITIDLDPIETENFAESVAAIATKREKNSSFQKFQKWLEHYGPFEAVIDAANVGLFMERNFTPSRVNLIANGIRQKLSSKKWPLIVLHNRRITGRKMNEAVNRTLIEKWKNGNALYATPTGSNDDWNQKKAIGMFPLHQSIVTKKIENGYVLQEGNHIYT 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2988636 2999182 - CmoCh11G006260.1 Cmo11g00626 391245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 130 152 - -
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 506 539 - -
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 541 561 - -
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 350 401 - -
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 495 561 - -
Cmo11g00626 1030 Pfam Pentacotripeptide-repeat region of PRORP 561 640 IPR033443 -
Cmo11g00626 1030 Pfam Pentacotripeptide-repeat region of PRORP 669 817 IPR033443 -
Cmo11g00626 1030 Pfam Protein-only RNase P 859 996 IPR031595 -
Cmo11g00626 1030 Gene3D Tetratricopeptide repeat domain 566 908 IPR011990 GO:0005515
Cmo11g00626 1030 PANTHER UNCHARACTERIZED 514 997 - -
Cmo11g00626 1030 ProSiteProfiles CRC domain profile. 83 203 IPR005172 -
Cmo11g00626 1030 MobiDBLite consensus disorder prediction 382 401 - -
Cmo11g00626 1030 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 166 200 IPR005172 -
Cmo11g00626 1030 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 730 764 IPR002885 -
Cmo11g00626 1030 PANTHER OS02G0273800 PROTEIN 514 997 - -
Cmo11g00626 1030 SMART CXC_2 163 204 IPR033467 -
Cmo11g00626 1030 SMART CXC_2 93 118 IPR033467 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00668 Cmo11g00626 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00669 Cmo-Chr10:3059747 Cmo11g00626 Cmo-Chr11:2988636 0 dispersed
Cmo10g00854 Cmo-Chr10:4039201 Cmo11g00626 Cmo-Chr11:2988636 2.28E-104 dispersed
Cmo11g00626 Cmo-Chr11:2988636 Cmo17g00212 Cmo-Chr17:1245799 1.08E-07 dispersed
Cmo14g01773 Cmo-Chr14:13699108 Cmo11g00626 Cmo-Chr11:2988636 5.98E-08 dispersed
Cmo10g00668 Cmo-Chr10:3055117 Cmo11g00626 Cmo-Chr11:2988636 0 wgd
Cmo11g00626 Cmo-Chr11:2988636 Cmo12g01288 Cmo-Chr12:11365188 3.43E-102 wgd
Cmo11g00626 Cmo-Chr11:2988636 Cmo05g01354 Cmo-Chr5:10498359 4.09E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10565 PF17177 PPR_long 3.10E-55 CL0020 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00626 K18213 - csv:101210714 809.29