Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00639 ATGGGTTGCGTTCATTCGAGGGTTTGTTTTGGCGAGGCTACAACTCCAAGATCTTCAAGAATTGCCGACACCCAAAATGCCAATACCGCCGTTGAAATCGACGCGATCTCTACTTCATCTTCTGATAGCCAAGAAGATGAAATCCGCAACCAACTGAATTCAAACAACAGAGATTCAGAAGTTGGAATAACGAGGCTGTCGAGAATTTCAGCGCAGTTCCTGCCTGCTGATGGGTCTCGCACCGTCAAAGTCCCTTCTGGAAACTTCGAATTGCGATATTCGTTTCTTTCGCAAAGAGGGTACTATCCCGATGCTCTCGATAAGGCGAATCAAGACAGTTTTTGCATCCACACCCCATTTGGGAACAACCCAGATGACCATTTCTTTGGAGTTTTCGACGGGCATGGGGAATTCGGAACACAGTGCTCGCAGTTTGTAAAACGAAAGCTCTGTGAAAATTTACTTAGAAATAGTAGGTTCCACAGTGACGCAGTTGAGGCTTGCCATGCGGCCTATTTGACGACTAATTCACAATTACACGCAGATATGTTGGATGATAGCATGAGTGGTACTACTGCTATTACTGTTTTAGTTAGAGGTACGACTATATATGTTTCTAATTCAGGTGATTCGAGAGCGGTTTTAGCCGAGCGGAGAGGAAAGGAAATTGTGGCTGTTGACCTCTCCATCGATCAAACCCCGTTCCGAACCGATGAACTTGAACGTGTTAAGCTTTATGGTGCCAGAGTTCTTACACTTGATCAGATTGAGGGGCTGAAGAACCCTGATGTTCGGTGCTGGGGTACTGAAGAAGGAGATGATGGTGATCCTCCTAGGCTATGGGTGCCTAATGGGATGTACCCTGGCACTGCTTTTACAAGAAGTATAGGTGACTCAATTGCTGAGACTATTGGAGTAGTTGCTACACCGGAAATTGTTGTTCTAGAGCTGACACCGGATAATCCTTTCTTTGTCGTTGCTAGTGATGGGGTTTTCGAGTTTCTTTCAAGCCAAACTGTGGTCGACATGGTTGCTAAACATAAAGATCCTCGTGATGCTTGTGCTGCGATTGTGGCCGAGTCTTACAGACTTTGGCTTCAATATGAGACTCGAACTGATGATATCACTGTTATCGTGGTGCACGTTAATGGGCTAACCAATACGGTTACTAGTGAATCGACAAGATCCAGTGGAGGTGGTTTTGTTCGATCCACTGTTCCTCAAGTTTTGGAGGTGACAGGATCAGAATCTCCCTCTACCTTTGGCTGGAATCGAAACAACCGTGCAAGGCAAGATTTGTCACGGGCGCGTCTCAGGGCTATCGAAAGTTCCCTAGAGAATGGGCGGGTCTGGGCGCCTCCATCTCCAGCTCACAGGAAGACATGGGAAGAAGAAGCACATATTGAACGAGCATTACACGATCATTTCCTCTTCAGAAAATTAACCGATTCTCAGTGCCAAGTTTTATTAGATTGCATGCAAAGAGTCGAGGTCATACCGGGGCAAATTGTAGTCGAACAAGGTGGCGAAGGTGACTGTTTTTATGTAGTTGGAAGCGGAGAGTTTGAGGTCTTGGCAACCCAGGAAGAAAGCCATGGAGAGGTTCCTCGAATTCTGCAACACTATACAGCTGAGAAGCTATCTTCCTTTGGCGAACTGGCTTTGATGTATAACAAACCACTTCAAGCCTCCGTACGTGCTGTGACTAGTGGCACACTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGAATTCTTATATCAGAATTTTCGAACTTGTCGTCCCTGAAATTGCTTCGATCTGTGGACCTTCTGTCGAGGTTAACGATCTTGCAATTGAGCCACATTGCAGATTGCCTTTCTGAAGTTACCTTCTCAGATGGGCAGTTGATAGTTGATGGGAACGAAGGTTTACGTGCACTTCACATTATTCATAAGGGCCAAGTGAGGATTACTTTTGATGCAGAGTTAATGAGCAATTCAAATATTTACGGGGACGAAGTTGCACAGAATGGTAAAGAGATCTCAGTTATTAAGAAAGAGGGAAGTTATTTTGGGGAATGGGCACTTCTTGGTGAGCATATTGGCTTCTTACGCGCAGTTGCTGTGGGAGATGTCGTATGCGCTATTTTAACGAAGGAAAAGTTTGAATCAGTTGTTGGTCCTTTACCAAAGCTCTCTCAAGATGACCAAAAGGAACATTCTTCAGACTCCCTCCATCACTCTGCTAAAATTATGGATATTTCAGCTCTTTCAAAAGTTGAGCTTGCTGATCTGGAGTGGAAAACGTGTTTATATTCCACAGAAGACAGTGAGATCGGGCTAGTTCGGTTAAGGAACACAGAAAGTATGCTTAGTTTAAAAAGATTTACAAGACAGAAGGTCAAAAGGCTGGGACTTGAAGAACAAATGTTGAAGGAGAAAAATCTTATGAAAACCGTCAGTTCTTCAGCTTGTGTGCCTCAACTCCTCTGCACTTGTTCAGATCAATCACATGCTGGCATATTGCTGAAAACATGCCTTGCTTGTCCTTTCTCTTCGATACTCCACGTTCCACTCGACGAGTCTTCTGCCCGTTTCTATGCAGCCTCTCTTGTTATAGCACTGGAAGATTTGCACAAGCTTGGTGTTCTCTACAGAGGAATCTACCCCGATGTTCTAATGCTGGACCAAAATGGACGGATACAGTTAGTCGACTTCCGATTCGGGAAAAGAACGTTGGGTGAGAGAACGTATACTATGTCGGGGAGGGAAGAGTTTTTAGCGCCTGAGATAGTTCAGGGCAATGGCCATGGTTTTGCTGCTGACTGGTGGGCGTTGGGAGTCTTAATCTATTTCATGCTGAAAGGTGAAACGCCATTTGGATCGTGTCGACAAAGCGAGCTCGATATTTCTTGTCTTCCCGAGATTATCAGTCCTGAAGCCACCGATCTCATCGTCAAGTTACTTGAAGTTGATGAGAAGAAACGACTTGGCAACGAGAACGAATACTCGGTTAGAAGTCATCCCTGGTTTGATGGTGTCGATTGGAAGGGGATCCGTGACAGTACCTTTCCCGTTCCTGACTCGATCACTTCTCGTGTGGCTCAATATTTGGCGAGCTACCCTGAAGATTCCTGTGGTTCTTTAGTCGAACCACCTGAAGATCCCGACGAGTCGGATGCCCCCAAGTGGATCAGCGAGTGGTAG 3186 45.48 MGCVHSRVCFGEATTPRSSRIADTQNANTAVEIDAISTSSSDSQEDEIRNQLNSNNRDSEVGITRLSRISAQFLPADGSRTVKVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGNNPDDHFFGVFDGHGEFGTQCSQFVKRKLCENLLRNSRFHSDAVEACHAAYLTTNSQLHADMLDDSMSGTTAITVLVRGTTIYVSNSGDSRAVLAERRGKEIVAVDLSIDQTPFRTDELERVKLYGARVLTLDQIEGLKNPDVRCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVATPEIVVLELTPDNPFFVVASDGVFEFLSSQTVVDMVAKHKDPRDACAAIVAESYRLWLQYETRTDDITVIVVHVNGLTNTVTSESTRSSGGGFVRSTVPQVLEVTGSESPSTFGWNRNNRARQDLSRARLRAIESSLENGRVWAPPSPAHRKTWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVEVIPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGEVPRILQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKLLRSVDLLSRLTILQLSHIADCLSEVTFSDGQLIVDGNEGLRALHIIHKGQVRITFDAELMSNSNIYGDEVAQNGKEISVIKKEGSYFGEWALLGEHIGFLRAVAVGDVVCAILTKEKFESVVGPLPKLSQDDQKEHSSDSLHHSAKIMDISALSKVELADLEWKTCLYSTEDSEIGLVRLRNTESMLSLKRFTRQKVKRLGLEEQMLKEKNLMKTVSSSACVPQLLCTCSDQSHAGILLKTCLACPFSSILHVPLDESSARFYAASLVIALEDLHKLGVLYRGIYPDVLMLDQNGRIQLVDFRFGKRTLGERTYTMSGREEFLAPEIVQGNGHGFAADWWALGVLIYFMLKGETPFGSCRQSELDISCLPEIISPEATDLIVKLLEVDEKKRLGNENEYSVRSHPWFDGVDWKGIRDSTFPVPDSITSRVAQYLASYPEDSCGSLVEPPEDPDESDAPKWISEW 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3071263 3076146 + CmoCh11G006390.1 Cmo11g00639 391258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00639 1061 CDD PP2Cc 108 382 IPR001932 -
Cmo11g00639 1061 ProSitePatterns PPM-type phosphatase domain signature. 128 136 IPR000222 GO:0043169
Cmo11g00639 1061 ProSiteProfiles cAMP/cGMP binding motif profile. 603 736 IPR000595 -
Cmo11g00639 1061 SUPERFAMILY cAMP-binding domain-like 457 586 IPR018490 -
Cmo11g00639 1061 SMART serkin_6 766 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00639 1061 CDD CAP_ED 477 585 IPR000595 -
Cmo11g00639 1061 Pfam Cyclic nucleotide-binding domain 497 585 IPR000595 -
Cmo11g00639 1061 Pfam Cyclic nucleotide-binding domain 622 719 IPR000595 -
Cmo11g00639 1061 ProSiteProfiles PPM-type phosphatase domain profile. 92 382 IPR001932 -
Cmo11g00639 1061 CDD CAP_ED 603 727 IPR000595 -
Cmo11g00639 1061 Gene3D - 86 383 IPR036457 -
Cmo11g00639 1061 PRINTS cAMP-dependent protein kinase signature 498 512 - -
Cmo11g00639 1061 PRINTS cAMP-dependent protein kinase signature 513 527 - -
Cmo11g00639 1061 PRINTS cAMP-dependent protein kinase signature 548 557 - -
Cmo11g00639 1061 PRINTS cAMP-dependent protein kinase signature 715 727 - -
Cmo11g00639 1061 SUPERFAMILY Protein kinase-like (PK-like) 772 1018 IPR011009 -
Cmo11g00639 1061 Gene3D Jelly Rolls 590 737 IPR014710 -
Cmo11g00639 1061 SMART PP2C_4 88 380 IPR001932 -
Cmo11g00639 1061 SUPERFAMILY cAMP-binding domain-like 596 726 IPR018490 -
Cmo11g00639 1061 ProSiteProfiles cAMP/cGMP binding motif profile. 477 585 IPR000595 -
Cmo11g00639 1061 SMART cnmp_10 477 600 IPR000595 -
Cmo11g00639 1061 SMART cnmp_10 603 737 IPR000595 -
Cmo11g00639 1061 Gene3D Phosphorylase Kinase; domain 1 768 842 - -
Cmo11g00639 1061 Pfam Protein phosphatase 2C 115 361 IPR001932 -
Cmo11g00639 1061 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 28 1051 - -
Cmo11g00639 1061 SUPERFAMILY PP2C-like 81 384 IPR036457 -
Cmo11g00639 1061 ProSiteProfiles Protein kinase domain profile. 739 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00639 1061 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 28 1051 - -
Cmo11g00639 1061 MobiDBLite consensus disorder prediction 1038 1061 - -
Cmo11g00639 1061 Pfam Protein kinase domain 775 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00639 1061 Gene3D Jelly Rolls 446 585 IPR014710 -
Cmo11g00639 1061 Gene3D Transferase(Phosphotransferase) domain 1 843 1018 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00684 Cmo11g00639 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00639 Cmo-Chr11:3071263 Cmo17g00274 Cmo-Chr17:1648265 5.13E-139 dispersed
Cmo10g00684 Cmo-Chr10:3120320 Cmo11g00639 Cmo-Chr11:3071263 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74660 PF00481 PP2C 3.20E-35 CL0238 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00639 - - csv:101217861 1846.63