Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00649 | ATGGCTCGCCTTATCGTTCACAATGACCCTGCAATTTTCAACTCTTCCTCTTCTTCTTCCTCCTCCTCGTCGTCGGCGTCGTCGGTTGAGATCGATCAGGCAGGGGCGGCGATTGCGGTTGACTCGAACCGGAAACGGGCGAAGCGGCCCAGGGAAACTAGCAACGGTAACAGCAAGCACCCGGTTTTCCGTGGGGTCCGAATGAGGGCATGGGGGAAATGGGTTTCCGAAATTCGCGAGCCCCGAAAGAAGAGCAGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCCCACGACGTCGCCGCTTTAACTATCAAAGGCAACTCCGCCATTCTCAACTTCCCCCAACTTGCCCATCAGTTCCCTCGCCCCGCTTCCAACTCCCCCCGCGACGTCCAGGCCGCCGCCGCCAAAGCTGCCTCCATGGAACTCCCCACCCCTCCCCTGCCTACGCCCTCGTCCTCGTCTCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCGGTTTGTGTCCGTCGACGCCGGAGGAATTGAGCGAAATCGTGGAGCTTCCAAGCTTGGGGACGAGTTACGAAACAACCGAATTGGGGAAAGAGTTCGTATTCGCTGACTCATTGGAAGGTTGGCTTTATTCTTACCCATGGTATAACAGAGTGAGCAATGTAGAAGAAGAAGAAGAAGAAGATTACAGGTTGTTCGGAGACCAGATTTCAATGGCGGATTATACACACACTTGGATTCCCACTACCACACCCTTCGAAACATTCTTGTGGCCACATTAA | 801 | 55.68 | MARLIVHNDPAIFNSSSSSSSSSSSASSVEIDQAGAAIAVDSNRKRAKRPRETSNGNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPQLAHQFPRPASNSPRDVQAAAAKAASMELPTPPLPTPSSSSPSPSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVFADSLEGWLYSYPWYNRVSNVEEEEEEDYRLFGDQISMADYTHTWIPTTTPFETFLWPH | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3103445 | 3104245 | + | CmoCh11G006490.1 | Cmo11g00649 | 391268 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00649 | 266 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 15 | 264 | - | - | |
Cmo11g00649 | 266 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Cmo11g00649 | 266 | CDD | AP2 | 63 | 119 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00649 | 266 | PRINTS | Ethylene responsive element binding protein signature | 63 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00649 | 266 | PRINTS | Ethylene responsive element binding protein signature | 85 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00649 | 266 | Pfam | AP2 domain | 61 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00649 | 266 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 15 | 264 | - | - | |
Cmo11g00649 | 266 | MobiDBLite | consensus disorder prediction | 10 | 31 | - | - | |
Cmo11g00649 | 266 | MobiDBLite | consensus disorder prediction | 126 | 184 | - | - | |
Cmo11g00649 | 266 | ProSiteProfiles | AP2/ERF domain profile. | 62 | 119 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00649 | 266 | MobiDBLite | consensus disorder prediction | 160 | 180 | - | - | |
Cmo11g00649 | 266 | SUPERFAMILY | DNA-binding domain | 62 | 120 | IPR016177 | GO:0003677 | |
Cmo11g00649 | 266 | SMART | rav1_2 | 62 | 125 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00649 | 266 | Gene3D | AP2/ERF domain | 62 | 120 | IPR036955 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00649 | Cmo-Chr11:3103445 | Cmo12g00206 | Cmo-Chr12:1361052 | 1.04E-60 | dispersed | |
Cmo01g00102 | Cmo-Chr1:461579 | Cmo11g00649 | Cmo-Chr11:3103445 | 2.66E-41 | wgd | |
Cmo10g00689 | Cmo-Chr10:3142161 | Cmo11g00649 | Cmo-Chr11:3103445 | 9.94E-102 | wgd | |
Cmo11g00649 | Cmo-Chr11:3103445 | Cmo12g01298 | Cmo-Chr12:11419240 | 7.46E-63 | wgd | |
Cmo11g00649 | Cmo-Chr11:3103445 | Cmo08g00686 | Cmo-Chr8:4379264 | 9.07E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10567 | PF00847 | AP2 | 2.40E-13 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00649 | K09286 | - | csv:101219745 | 306.99 |