Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00649 ATGGCTCGCCTTATCGTTCACAATGACCCTGCAATTTTCAACTCTTCCTCTTCTTCTTCCTCCTCCTCGTCGTCGGCGTCGTCGGTTGAGATCGATCAGGCAGGGGCGGCGATTGCGGTTGACTCGAACCGGAAACGGGCGAAGCGGCCCAGGGAAACTAGCAACGGTAACAGCAAGCACCCGGTTTTCCGTGGGGTCCGAATGAGGGCATGGGGGAAATGGGTTTCCGAAATTCGCGAGCCCCGAAAGAAGAGCAGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCCCACGACGTCGCCGCTTTAACTATCAAAGGCAACTCCGCCATTCTCAACTTCCCCCAACTTGCCCATCAGTTCCCTCGCCCCGCTTCCAACTCCCCCCGCGACGTCCAGGCCGCCGCCGCCAAAGCTGCCTCCATGGAACTCCCCACCCCTCCCCTGCCTACGCCCTCGTCCTCGTCTCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCGGTTTGTGTCCGTCGACGCCGGAGGAATTGAGCGAAATCGTGGAGCTTCCAAGCTTGGGGACGAGTTACGAAACAACCGAATTGGGGAAAGAGTTCGTATTCGCTGACTCATTGGAAGGTTGGCTTTATTCTTACCCATGGTATAACAGAGTGAGCAATGTAGAAGAAGAAGAAGAAGAAGATTACAGGTTGTTCGGAGACCAGATTTCAATGGCGGATTATACACACACTTGGATTCCCACTACCACACCCTTCGAAACATTCTTGTGGCCACATTAA 801 55.68 MARLIVHNDPAIFNSSSSSSSSSSSASSVEIDQAGAAIAVDSNRKRAKRPRETSNGNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPQLAHQFPRPASNSPRDVQAAAAKAASMELPTPPLPTPSSSSPSPSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVFADSLEGWLYSYPWYNRVSNVEEEEEEDYRLFGDQISMADYTHTWIPTTTPFETFLWPH 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3103445 3104245 + CmoCh11G006490.1 Cmo11g00649 391268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00649 266 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 264 - -
Cmo11g00649 266 MobiDBLite consensus disorder prediction 1 62 - -
Cmo11g00649 266 CDD AP2 63 119 IPR001471 GO:0003700|GO:0006355
Cmo11g00649 266 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Cmo11g00649 266 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Cmo11g00649 266 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Cmo11g00649 266 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 264 - -
Cmo11g00649 266 MobiDBLite consensus disorder prediction 10 31 - -
Cmo11g00649 266 MobiDBLite consensus disorder prediction 126 184 - -
Cmo11g00649 266 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Cmo11g00649 266 MobiDBLite consensus disorder prediction 160 180 - -
Cmo11g00649 266 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Cmo11g00649 266 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Cmo11g00649 266 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00649 Cmo-Chr11:3103445 Cmo12g00206 Cmo-Chr12:1361052 1.04E-60 dispersed
Cmo01g00102 Cmo-Chr1:461579 Cmo11g00649 Cmo-Chr11:3103445 2.66E-41 wgd
Cmo10g00689 Cmo-Chr10:3142161 Cmo11g00649 Cmo-Chr11:3103445 9.94E-102 wgd
Cmo11g00649 Cmo-Chr11:3103445 Cmo12g01298 Cmo-Chr12:11419240 7.46E-63 wgd
Cmo11g00649 Cmo-Chr11:3103445 Cmo08g00686 Cmo-Chr8:4379264 9.07E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10567 PF00847 AP2 2.40E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00649 K09286 - csv:101219745 306.99