Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo11g00664 | ATGGGGAGAGCCACCAGATGGCTGAAGAACTTGTTTGGGATTAAGAAAGAAAAACAACCCACCATGGAAAATTCCACCTCCGCCTTCATGAAGGATAAGAACCCCACTTCTAATTTCGTCGGAGACGCCCAACTCTGCAACAATCCGGCTACAATACCGCCCAATTTATCCGCCGCTGAGGCCGCTTGGCTCAAATCCTTCTACTCCGAAACAGAGAAGGAACAGAGCAAGCACGCTATAGCAGTAGCTGCAGCCACTGCTGCTGCTGCTGATGCTGCGGTTGCTGCAGCACAAGCTGCTGTGGCTGTCGTCCGGCTCACTAGCCATGGGCGAGGTACTATGTTCGGTGGCGGCCGAGAGAGATGGGCCTCTGTCAAGATTCAAACTTGCTTCAGAGGGTTTCTGGCGAGAAAAGCACTGAGAGCGCTTAAAGGACTGGTGAAATTACAGGCGCTTGTGAGAGGATATTTGATTCGTAAACAAGCAACGGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAGGCCACCGTTCGATCTCAGAGAACTCGCAGATTTGAACTCCAAGCTCGAAAATCTACGGAGCGGTTTGACGACACAAGGAGTGAGCACACAGCTTCAGTACACAGCAGAAGGCTTTCATCTTCTTTTGACAACACACCATTTACAGCGCTTGAAGAAAGCCCCAAAATCGTTGAAATGGACACCGGCCGACCAAAATCCTGGTCACGCCGGACGAACACGTCAGCGTCGGAATTTGGCGACGACCCATTTCACCAAACGTTGTCGTCTCCACTCCCCTGTCGAACTCCGTCGCGTTTGCAGATTCCTGATTGCCGGCATGATTCCGACTGGGGTCTCACTGGCGACGAGTGCCGTTTGATCTCGACAGCGCAGAGCACTCCACGATTCGTCAGCTCCGGCAGATCCAATGGCCCTCCGACTCCAGCGAAGAGCATTTGTGCTGATAATTTCTTCAGAGGGTACTTGAATTTCCCAAATTACATGGCGAATACTCAATCGTTTATGGCGAAATTGAGGTCCCAGAGTGCTCCGAAACAGAGGCCGGAGCCGGGCTCGAAGAAGAGGCTTTCGTTGAATGAATTAATGGAATCGAGAAGCAGCCTTAGTGGGGTTCGAATGCAGAGGTCTTGTTCGCAGGTACAAGAAGCCATTAATTTCAAGAATGCTGTGATGAGCAAACTGGATAGACCATCGGAATTCAACAACTTGCAGAGAAGATCATGA | 1251 | 50.6 | MGRATRWLKNLFGIKKEKQPTMENSTSAFMKDKNPTSNFVGDAQLCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGFLARKALRALKGLVKLQALVRGYLIRKQATATLHSMQALIRAQATVRSQRTRRFELQARKSTERFDDTRSEHTASVHSRRLSSSFDNTPFTALEESPKIVEMDTGRPKSWSRRTNTSASEFGDDPFHQTLSSPLPCRTPSRLQIPDCRHDSDWGLTGDECRLISTAQSTPRFVSSGRSNGPPTPAKSICADNFFRGYLNFPNYMANTQSFMAKLRSQSAPKQRPEPGSKKRLSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRRS | 416 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3196822 | 3198438 | + | CmoCh11G006640.1 | Cmo11g00664 | 391283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo11g00664 | 416 | MobiDBLite | consensus disorder prediction | 235 | 267 | - | - | |
| Cmo11g00664 | 416 | MobiDBLite | consensus disorder prediction | 193 | 214 | - | - | |
| Cmo11g00664 | 416 | Pfam | IQ calmodulin-binding motif | 121 | 141 | IPR000048 | GO:0005515 | |
| Cmo11g00664 | 416 | Pfam | IQ calmodulin-binding motif | 147 | 161 | IPR000048 | GO:0005515 | |
| Cmo11g00664 | 416 | MobiDBLite | consensus disorder prediction | 193 | 209 | - | - | |
| Cmo11g00664 | 416 | ProSiteProfiles | IQ motif profile. | 144 | 171 | IPR000048 | GO:0005515 | |
| Cmo11g00664 | 416 | SMART | iq_5 | 119 | 141 | IPR000048 | GO:0005515 | |
| Cmo11g00664 | 416 | SMART | iq_5 | 142 | 163 | IPR000048 | GO:0005515 | |
| Cmo11g00664 | 416 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 407 | - | - | |
| Cmo11g00664 | 416 | Pfam | Protein of unknown function (DUF4005) | 305 | 381 | IPR025064 | - | |
| Cmo11g00664 | 416 | PANTHER | - | 1 | 407 | - | - | |
| Cmo11g00664 | 416 | MobiDBLite | consensus disorder prediction | 242 | 267 | - | - | |
| Cmo11g00664 | 416 | Gene3D | - | 117 | 171 | - | - | |
| Cmo11g00664 | 416 | Coils | Coil | 414 | 416 | - | - | |
| Cmo11g00664 | 416 | ProSiteProfiles | IQ motif profile. | 120 | 148 | IPR000048 | GO:0005515 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo10g00702 | Cmo11g00664 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo11g00664 | Cmo-Chr11:3196822 | Cmo14g01779 | Cmo-Chr14:13719051 | 2.39E-36 | dispersed | |
| Cmo01g00094 | Cmo-Chr1:424535 | Cmo11g00664 | Cmo-Chr11:3196822 | 2.50E-68 | wgd | |
| Cmo10g00702 | Cmo-Chr10:3221407 | Cmo11g00664 | Cmo-Chr11:3196822 | 0 | wgd | |
| Cmo11g00664 | Cmo-Chr11:3196822 | Cmo14g01322 | Cmo-Chr14:11042130 | 2.44E-82 | wgd | |
| Cmo11g00664 | Cmo-Chr11:3196822 | Cmo17g00728 | Cmo-Chr17:7275951 | 5.81E-111 | wgd | |
| Cmo11g00664 | Cmo-Chr11:3196822 | Cmo08g00706 | Cmo-Chr8:4464506 | 1.03E-121 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo11g00664 | - | - | cmax:111495188 | 728.013 |