Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo11g00665 | ATGTCAAAACTTCAGCCCCCTTTCGCGTTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTGCTCACTCAAACGCACTGCCACACTAAAGGGATCAGACCCAAGAAATCGCCCAGAACCATTCTTCCCAAGAATTCCACCAAAACCCAATTCTCAGAACAGCAATTTATGAAATGGGTCAAATTCGTCGGCAGCCTCAAACACTCTGTTTTCAGAACGGCGAAGAATAAGCTTTTTCCTTCTTACACACTCCACGTCGCTAAAAACCCCGCCGCCGGCGACTTTACGTCGATCCAAGACGCCATCGATTCCCTACCCTTCATTAATTTGATTAGAGTTGTGATCAAGGTTCATGCAGGAGTATACAAAGAAAAAGTAATCATACCACCGTTCAAATCGTTCATAACAATCGAAGGAGCAGGGGCAGCCAAAACGATCGTTCAATGGGGGGACACAGCACAAACACGAGGCCCAAAGGGGCAGCCGTTGGGGACCTATAACTCCGCAACATTCGCAGTAAATTCCCCTTATTTCATAGCCAAAAACATCACATTCAAGAACACCACCCCTGTACCACCACCAGGGGCGATAGGGAAGCAGGCGGTGGCGTTCAGAATCTCAGGCGACACGGCGGCATTCTACGGATGCAGATTCTTAGGAGCTCAGGACACACTGTACGACCATCTGGGTCGGCATTATTACAAGGATTGTTACATCGAAGGGTCAGTGGACTTCATTTTTGGAAATGGGTTGTCTCTGTTTGAGGGGTGTCACGTGCACGCAATAGCGAGGTACACAGGGGCGTTGACAGCGCAGGGGAGAAGCAGCCTGCTGGAGGACACAGGGTTCTCATTCGTAAACTGTAAGGTCACGGGGTCTGGAGCGCTGTACTTGGGAAGGGCATGGGGGCCCTTCTCTAGGGTCGTCTTCGCTTACACTTACATGGACAATATCATCATTCCCAAAGGCTGGTACAATTGGGGTGATCCCAATCGCGAAATGACTGTGTTCTACGGGCAATACAAATGTACAGGAGAAGGAGGTAGGTTTGCAGGCAGAGTTTCATGGTCCAGAGAGCTCACTGACGAGGAAGCCAAGCCTTTTATTTCGCTTAGCTTCATCGATGGCTCTGAATGGATCAAAATTTAA | 1149 | 48.74 | MSKLQPPFAFSLLLLLLLLLLLTQTHCHTKGIRPKKSPRTILPKNSTKTQFSEQQFMKWVKFVGSLKHSVFRTAKNKLFPSYTLHVAKNPAAGDFTSIQDAIDSLPFINLIRVVIKVHAGVYKEKVIIPPFKSFITIEGAGAAKTIVQWGDTAQTRGPKGQPLGTYNSATFAVNSPYFIAKNITFKNTTPVPPPGAIGKQAVAFRISGDTAAFYGCRFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIARYTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGEGGRFAGRVSWSRELTDEEAKPFISLSFIDGSEWIKI | 382 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3199173 | 3201300 | - | CmoCh11G006650.1 | Cmo11g00665 | 391284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo11g00665 | 382 | Pfam | Pectinesterase | 86 | 376 | IPR000070 | GO:0030599|GO:0042545 | |
| Cmo11g00665 | 382 | SUPERFAMILY | Pectin lyase-like | 79 | 381 | IPR011050 | - | |
| Cmo11g00665 | 382 | ProSitePatterns | Pectinesterase signature 2. | 239 | 248 | IPR033131 | - | |
| Cmo11g00665 | 382 | Gene3D | - | 80 | 382 | IPR012334 | - | |
| Cmo11g00665 | 382 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 6 | 381 | - | - | |
| Cmo11g00665 | 382 | PANTHER | PECTINESTERASE | 6 | 381 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo10g00703 | Cmo11g00665 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo02g01584 | Cmo-Chr2:9136644 | Cmo11g00665 | Cmo-Chr11:3199173 | 1.68E-105 | dispersed | |
| Cmo11g00665 | Cmo-Chr11:3199173 | Cmo14g00235 | Cmo-Chr14:1081221 | 1.58E-95 | dispersed | |
| Cmo04g00823 | Cmo-Chr4:4101295 | Cmo11g00665 | Cmo-Chr11:3199173 | 4.17E-173 | transposed | |
| Cmo15g00263 | Cmo-Chr15:1272040 | Cmo11g00665 | Cmo-Chr11:3199173 | 8.37E-92 | transposed | |
| Cmo01g00289 | Cmo-Chr1:1373009 | Cmo11g00665 | Cmo-Chr11:3199173 | 5.48E-38 | transposed | |
| Cmo10g00703 | Cmo-Chr10:3224522 | Cmo11g00665 | Cmo-Chr11:3199173 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo11g00665 | K01051 | - | csv:101215894 | 697.967 |